Factsheet for VIT_13s0084g00800.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20709	Soybean	nucleus	62.07	60.74
KRH13365	Soybean	nucleus	62.07	59.28
CDY71514	Canola	nucleus	54.86	58.14
CDX73485	Canola	nucleus	54.86	57.0
Bra007069.1-P	Field mustard	nucleus	54.86	56.27
KRH30077	Soybean	nucleus	59.56	55.72
KRH62829	Soybean	nucleus	60.19	52.75
CDX83751	Canola	nucleus	21.32	51.52
AT3G54390.2	Thale cress	nucleus	50.16	51.28
PGSC0003DMT400013829	Potato	nucleus	52.98	49.13
Solyc01g096470.2.1	Tomato	nucleus	51.41	47.81
GSMUA_Achr4P05890_001	Banana	nucleus	37.93	39.54
GSMUA_Achr9P22780_001	Banana	mitochondrion	35.74	33.14
Zm00001d006331_P001	Maize	cytosol	31.97	30.54
TraesCS5B01G362600.2	Wheat	nucleus	32.92	30.09
KXG36174	Sorghum	cytosol	31.66	29.97
Os09t0558200-01	Rice	cytosol	31.35	29.76
Zm00001d021389_P001	Maize	cytosol	31.03	29.55
TraesCS5A01G360100.1	Wheat	nucleus	31.97	29.06
TraesCS5D01G369500.2	Wheat	nucleus	31.66	28.86
HORVU5Hr1G088750.1	Barley	cytosol	14.11	28.85
HORVU5Hr1G088770.7	Barley	nucleus	31.03	27.12
VIT_07s0005g06670.t01	Wine grape	nucleus	23.2	26.24
VIT_15s0021g01220.t01	Wine grape	nucleus, plastid	20.69	20.62
VIT_00s0204g00020.t01	Wine grape	nucleus	18.18	14.76

Protein Annotations

EntrezGene:100254951	wikigene:100254951	MapMan:15.5.20	EMBL:AM459027	ProteinID:CAN81128	ProteinID:CAN81128.1
ProteinID:CCB58646	ProteinID:CCB58646.1	UniProt:F6HVD4	EMBL:FN596254	EntrezGene:LOC100254951	wikigene:LOC100254951
PFAM:PF13837	PANTHER:PTHR31307	PANTHER:PTHR31307:SF7	TIGR:TC53062	UniParc:UPI0001985C05	ArrayExpress:VIT_13s0084g00800
EnsemblPlantsGene:VIT_13s0084g00800	EnsemblPlants:VIT_13s0084g00800.t01	unigene:Vvi.8002	RefSeq:XP_002264776	RefSeq:XP_002264776.1	SEG:seg

Description

No Description!

Coordinates

chr13:-:20024428..20026234

Molecular Weight (calculated)

35501.2 Da

IEP (calculated)

10.186

GRAVY (calculated)

-0.932

Length

319 amino acids

Sequence
(BLAST)

001: MDREPNQEDP PLLPTNNSKE DSPRKPLGGG SSGGGGGGAG GADRLKRDEW SEGAVSSLLE AYETKWVLRN RAKLKGHDWE EVARHVSSRA NCTKSPKTQT
101: QCKNKIESMK KRYRSESATP DASSWPLFQR LDLLLRGSGA PPIPPPVTTP LMLLETLPPQ PPPPPSQPPH TLMITQNSHE SNGLHRAAKE DGVGTKLSDH
201: ASDKVAMETD SSTPALYSDK EKLKSKKIKM RIEKKKRRRR EDWEVAESIR WLAEVVVRSE QARMDTMREL ERMRVEADAK RGEMDLKRTE IIANTQLEIA
301: RLFAGSGKGV DSSLRIGRS

Best Arabidopsis Sequence Match ( AT3G54390.1 )
(BLAST)

001: MENGESNQEN LKSLNHDESL KKPSASSVVV DRLKRDEWSE GAVSTLLEAY ESKWVLRNRA KLKGQDWEDV AKHVSSRATH TKSPKTQTQC KNKIESMKKR
101: YRSESATADG SSWPLYPRLD HLLRGTQPQP QPQAVLPLNC SVPLLLLEPP LPAVAHPPQI SYGSNGVGKI PKEDGFKPEN KPEKDAEMDT DSSTPVVKTK
201: VRGKKVKRRY KEEKEEIAGS IRWLAEVVMR SERARMETMK EIERMRAEAE AKRGELDLKR TEIMANTQLE IARIFAAAAS SGQNKGVDSS LRIGRN

Arabidopsis Description

Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.