Factsheet for VIT_15s0021g01220.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50980	Soybean	nucleus	18.75	50.42
KRH41794	Soybean	nucleus	48.44	47.69
KRH40215	Soybean	nucleus	46.56	46.27
CDY48253	Canola	nucleus	25.62	45.81
Solyc01g088820.2.1	Tomato	plastid	45.62	44.38
PGSC0003DMT400004269	Potato	plastid	45.62	44.38
Bra004859.1-P	Field mustard	nucleus	39.69	42.05
CDX74679	Canola	nucleus	39.69	42.05
GSMUA_Achr11P...	Banana	plastid	41.88	41.49
Bra000360.1-P	Field mustard	nucleus	42.5	38.2
CDX83420	Canola	nucleus	40.31	36.65
AT2G44730.1	Thale cress	nucleus	42.5	36.56
CDX95611	Canola	nucleus	39.69	35.98
KRH01003	Soybean	nucleus	29.69	35.19
GSMUA_Achr11P...	Banana	nucleus	22.5	32.88
VIT_07s0005g06670.t01	Wine grape	nucleus	27.19	30.85
VIT_00s0204g00020.t01	Wine grape	nucleus	37.19	30.28
VIT_13s0084g00800.t01	Wine grape	nucleus	20.62	20.69

Protein Annotations

EntrezGene:100263384	wikigene:100263384	MapMan:15.5.20	EMBL:AM471274	ProteinID:CAN81481	ProteinID:CAN81481.1
ProteinID:CCB43905	ProteinID:CCB43905.1	UniProt:F6GVC2	EMBL:FN594952	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019748
GO:GO:0019760	GO:GO:0043565	GO:GO:0044212	InterPro:IPR006578	EntrezGene:LOC100263384	wikigene:LOC100263384
InterPro:MADF-dom	PFAM:PF13837	PANTHER:PTHR31307	PANTHER:PTHR31307:SF3	SMART:SM00595	TIGR:TC64970
UniParc:UPI0001984EA4	ArrayExpress:VIT_15s0021g01220	EnsemblPlantsGene:VIT_15s0021g01220	EnsemblPlants:VIT_15s0021g01220.t01	unigene:Vvi.17242	RefSeq:XP_002270272
RefSeq:XP_002270272.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr15:-:11288578..11290076

Molecular Weight (calculated)

35314.8 Da

IEP (calculated)

9.694

GRAVY (calculated)

-0.931

Length

320 amino acids

Sequence
(BLAST)

001: MASTTSPAQD ASLPPPQQQP SPAPPSSRRL PPPCWSHDET VALIDSYRDK WYALRRGNLR ANHWQEVADA VSRRCPLSSP PKTSVQCRHK MEKLRKRYRT
101: ELQRSMNAPS HRFNSSWVHF KRMDAMEKGP SSTAAVESGS DGDDDDDDDD QDLYEDGGLK RGIGNTRSLQ GLMSNGIGSG GGPGAGFRIR IPGRGNLDSP
201: PMAKIYGNFD QNPNPSPNFG SRVLGDNDRA RPAMGKRSGG GGGDPVAEMV AAIKMLGDGF AKMEQKKMDM AREVEAMRMD MEMKRTEMIL ESQQRIVEAF
301: ANALSEKKKK PKKMTSSPEY

Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)

001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.