CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50980	Soybean	nucleus	22.15	60.5
KRH40215	Soybean	nucleus	54.15	54.66
CDY48253	Canola	nucleus	27.38	49.72
VIT_15s0021g01220.t01	Wine grape	nucleus, plastid	47.69	48.44
Bra004859.1-P	Field mustard	nucleus	42.46	45.7
CDX74679	Canola	nucleus	42.46	45.7
PGSC0003DMT400004269	Potato	plastid	45.23	44.68
Solyc01g088820.2.1	Tomato	plastid	44.92	44.38
Bra000360.1-P	Field mustard	nucleus	44.62	40.73
CDX83420	Canola	nucleus	44.0	40.62
CDX95611	Canola	nucleus	44.0	40.51
KRH01003	Soybean	nucleus	33.54	40.37
GSMUA_Achr11P...	Banana	plastid	40.0	40.25
AT2G44730.1	Thale cress	nucleus	44.0	38.44
GSMUA_Achr11P...	Banana	nucleus	23.69	35.16
KRH07500	Soybean	cytosol, mitochondrion, nucleus	27.69	33.83
KRH66081	Soybean	cytosol	27.69	32.14
KRH30077	Soybean	nucleus	22.77	21.7
KRH20709	Soybean	nucleus	21.23	21.17
KRH13365	Soybean	nucleus	20.92	20.36
KRH62829	Soybean	nucleus	21.85	19.51

Protein Annotations

EMBL:ACUP02004781	EnsemblPlants:KRH41794	EnsemblPlantsGene:GLYMA_08G051800	EntrezGene:100794175	InterPro:IPR006578	InterPro:IPR017877
InterPro:MADF-dom	InterPro:Myb-like_dom	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF3	PFAM:PF13837
PFscan:PS50090	ProteinID:KRH41794	ProteinID:KRH41794.1	SEG:seg	SMART:SM00595	SUPFAM:SSF101447
UniParc:UPI0002338B4E	UniProt:I1KQI5	MapMan:15.5.20	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:4025445..4027275

Molecular Weight (calculated)

36150.9 Da

IEP (calculated)

10.070

GRAVY (calculated)

-0.918

Length

325 amino acids

Sequence
(BLAST)

001: MDDASSSPPP PPPPPDPPSA VPLSLVPLPA PPSSTRRLPP PCWSPDETLA LIDAYRDKWY SLGRGNLKAT HWQEVADAVS SRCPNASPPK TPVQCRHKME
101: KLRKRYRTEI QRARSLPVSR FNSSWAHFKL MDSMEKGPSP VKPDINDSDH NNTDNDDDDD DAGQDLYHHQ INHNGHTRSL NKLYRNGFPG SGGGAGGFRI
201: RIPTGLSAPQ QQHPGSASKV FGKVGNQRFS PNLNQNPNPN LGKKRERDPV GEVVAAIKVL GDGFVRMEQM KMEMAREIET MRMEMEMKRT EMILESQQRI
301: VEAFAKAVSE KNRKKKPKTV PSASG

Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)

001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.