Factsheet for PGSC0003DMT400004269

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g088820.2.1	Tomato	plastid	94.53	94.53
KRH50980	Soybean	nucleus	17.93	49.58
VIT_15s0021g01220.t01	Wine grape	nucleus, plastid	44.38	45.62
KRH41794	Soybean	nucleus	44.68	45.23
CDY48253	Canola	nucleus	24.01	44.13
KRH40215	Soybean	nucleus	42.55	43.48
Bra004859.1-P	Field mustard	nucleus	39.82	43.38
CDX74679	Canola	nucleus	39.82	43.38
CDX83420	Canola	nucleus	41.03	38.35
CDX95611	Canola	nucleus	40.43	37.68
GSMUA_Achr11P...	Banana	plastid	36.78	37.46
Bra000360.1-P	Field mustard	nucleus	40.43	37.36
AT2G44730.1	Thale cress	nucleus	40.73	36.02
KRH01003	Soybean	nucleus	27.66	33.7
GSMUA_Achr11P...	Banana	nucleus	20.67	31.05
PGSC0003DMT400051788	Potato	nucleus	28.27	28.53
PGSC0003DMT400052836	Potato	nucleus	33.43	26.57
PGSC0003DMT400013829	Potato	nucleus	17.93	17.15

Protein Annotations

EntrezGene:102594353	MapMan:15.5.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019748	GO:GO:0019760	GO:GO:0043565
GO:GO:0044212	InterPro:IPR006578	InterPro:IPR017877	UniProt:M0ZN58	InterPro:MADF-dom	InterPro:Myb-like_dom
PFAM:PF13837	EnsemblPlantsGene:PGSC0003DMG400001696	PGSC:PGSC0003DMG400001696	EnsemblPlants:PGSC0003DMT400004269	PFscan:PS50090	PANTHER:PTHR31307
PANTHER:PTHR31307:SF3	SMART:SM00595	UniParc:UPI0002966F5D	RefSeq:XP_006354664.1	SEG:seg	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400001696]

Coordinates

chr1:+:68691922..68694120

Molecular Weight (calculated)

37099.5 Da

IEP (calculated)

9.447

GRAVY (calculated)

-0.696

Length

329 amino acids

Sequence
(BLAST)

001: MVTLSPSTQD FSTTPSQILS TSNVTVAVAS RRLPPPCWSH EETVALIDAY RDKWYSLRKG NLRANHWQEV ADAVGSRCLV DPPKTAVQCR HKMEKLRKRY
101: RAEIQRAAPY GGARSHRYCS AWVHFKRMDM MERGPNAVSP PPSEDEADED VEDYHQNGVK LVGDLYGNNV HTGNRSSFQG VVSNGGGGFR IRIPGMPGLA
201: PQMAKPYSRF EEARVETPSN FGSSQMFRDG FVKKADLGKR VVGEGVGEKK KEDPMTEMVD AIKVLGDGFV RMERMKMDAA RELEGMRMEM EMKRTEMILE
301: SQQRIVEAFA QALSEKKYKK AKRMPTPEC

Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)

001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.