Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74679 | Canola | nucleus | 79.33 | 47.02 |
| CDX83420 | Canola | nucleus | 60.89 | 30.97 |
| CDX95611 | Canola | nucleus | 59.78 | 30.31 |
| GSMUA_Achr11P... | Banana | nucleus | 36.31 | 29.68 |
| AT2G44730.1 | Thale cress | nucleus | 59.78 | 28.76 |
| KRH41794 | Soybean | nucleus | 49.72 | 27.38 |
| VIT_15s0021g01220.t01 | Wine grape | nucleus, plastid | 45.81 | 25.62 |
| KRH40215 | Soybean | nucleus | 45.81 | 25.47 |
| PGSC0003DMT400004269 | Potato | plastid | 44.13 | 24.01 |
| Solyc01g088820.2.1 | Tomato | plastid | 43.58 | 23.71 |
| CDX83751 | Canola | nucleus | 17.32 | 23.48 |
| GSMUA_Achr11P... | Banana | plastid | 39.11 | 21.67 |
| CDY39785 | Canola | nucleus | 32.4 | 20.86 |
| CDY42958 | Canola | nucleus | 35.75 | 20.65 |
| CDY52087 | Canola | nucleus, plastid | 30.17 | 18.18 |
| CDX77381 | Canola | nucleus | 28.49 | 17.17 |
| CDY35602 | Canola | cytosol | 36.31 | 15.7 |
| CDY71514 | Canola | nucleus | 24.58 | 14.62 |
| CDX73485 | Canola | nucleus | 24.58 | 14.33 |
| KRH01003 | Soybean | nucleus | 15.08 | 10.0 |
| KRH50980 | Soybean | nucleus | 6.15 | 9.24 |
Protein Annotations
| EnsemblPlants:CDY48253 | EnsemblPlantsGene:GSBRNA2T00089119001 | Gene3D:1.10.10.60 | InterPro:IPR006578 | InterPro:IPR017877 | InterPro:MADF-dom |
| InterPro:Myb-like_dom | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF3 | PFAM:PF13837 | PFscan:PS50090 |
| ProteinID:CDY48253 | ProteinID:CDY48253.1 | SEG:seg | SMART:SM00595 | UniParc:UPI0004EEACE1 | UniProt:A0A078IGG7 |
| MapMan:15.5.20 | : | : | : | : | : |
Description
BnaC04g05120DBnaC04g05120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGG7]
Coordinates
chrLK032762:-:64772..65911
Molecular Weight (calculated)
19763.2 Da
IEP (calculated)
9.804
GRAVY (calculated)
-0.766
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDPDSPPTH DPIPDRDQPE PASATDPKIA SVPATASKSS RRLPPPCWSL EETTALIDGY RDKWHALGRG NLKANHWEEV AEAVAAACPG VAPRKTAVQC
101: RHKMEKLRQR YRAEIQRARS VPVARFVSSW VHYKRMEAME ITKPDGEENQ FSGGGPTPRF FNRNAAAAAA GSGFGYRRV
101: RHKMEKLRQR YRAEIQRARS VPVARFVSSW VHYKRMEAME ITKPDGEENQ FSGGGPTPRF FNRNAAAAAA GSGFGYRRV
001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR
Arabidopsis Description
Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.