CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83420	Canola	nucleus	81.02	81.25
Bra000360.1-P	Field mustard	nucleus	80.17	79.49
CDX74679	Canola	nucleus	52.97	61.92
CDY48253	Canola	nucleus	30.31	59.78
AT2G44730.1	Thale cress	nucleus	60.62	57.53
KRH41794	Soybean	nucleus	40.51	44.0
KRH50980	Soybean	nucleus	14.45	42.86
PGSC0003DMT400004269	Potato	plastid	37.68	40.43
VIT_15s0021g01220.t01	Wine grape	nucleus, plastid	35.98	39.69
Solyc01g088820.2.1	Tomato	plastid	36.54	39.21
KRH40215	Soybean	nucleus	35.41	38.82
GSMUA_Achr11P...	Banana	plastid	32.01	34.98
GSMUA_Achr11P...	Banana	nucleus	19.55	31.51
CDY42958	Canola	nucleus	26.91	30.65
CDY39785	Canola	nucleus	22.95	29.14
KRH01003	Soybean	nucleus	21.81	28.52
CDY52087	Canola	nucleus, plastid	22.66	26.94
CDX77381	Canola	nucleus	21.81	25.93
CDX83751	Canola	nucleus	9.63	25.76
CDY71514	Canola	nucleus	21.25	24.92
CDY35602	Canola	cytosol	28.33	24.15
CDX73485	Canola	nucleus	20.96	24.1

Protein Annotations

EnsemblPlants:CDX95611	EnsemblPlantsGene:GSBRNA2T00101482001	Gene3D:1.10.10.60	InterPro:IPR006578	InterPro:IPR017877	InterPro:MADF-dom
InterPro:Myb-like_dom	InterPro:SANT/Myb	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF3	PFAM:PF13837
PFscan:PS50090	ProteinID:CDX95611	ProteinID:CDX95611.1	SEG:seg	SMART:SM00595	SMART:SM00717
UniParc:UPI0004EE99CB	MapMan:15.5.20	:	:	:	:

Description

BnaC03g24920D

Coordinates

chrLK031890:-:225458..226519

Molecular Weight (calculated)

39344.1 Da

IEP (calculated)

9.661

GRAVY (calculated)

-0.834

Length

353 amino acids

Sequence
(BLAST)

001: MSDPDSPLEQ DPIQDPLPVR NQSPPPQPDD SVTDLKIAST PAVAKNSRRL PPPCWSLEET IALIDGYRDK WHALNRGNLK ANHWEEVAEA VAGNCPGVTP
101: KKTAVQCRHK MEKLRKRYRT EIQRARSVPV ARFVSSWVHY KRMEAMEDRP ESKPGGGDEE RAELYGGGGS VGRSTPRFFN RNGTAGGSSS SGGIRIRIPT
201: GVSIAQPGPR FPGKIDPKYT ASASSRLGRV GGGTSYGARG VRIQEGEERA GKRGREMMMM MTMTTEEEEE ESDDPMVEIA SAIKLLGDTL LRTEEKKMEM
301: TREIEAMRME MEMKRTKMIL ESQQRIVEAF AKSMSENLEE KKKKARRVSS LPP

Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)

001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.