Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G17060.1 | CDX71688 | AT4G00650.1 | 19429606 |
| AT4G17060.1 | CDY05835 | AT4G00650.1 | 19429606 |
| AT4G17060.1 | CDY32645 | AT4G00650.1 | 19429606 |
| AT4G17060.1 | CDY38847 | AT4G00650.1 | 19429606 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G17060.1 | Thale cress | nucleus | 46.77 | 46.77 |
| CDY35602 | Canola | cytosol | 59.35 | 44.44 |
| CDY48253 | Canola | nucleus | 20.65 | 35.75 |
| CDX74679 | Canola | nucleus | 30.97 | 31.79 |
| TraesCS1B01G229500.1 | Wheat | nucleus | 31.61 | 30.91 |
| Zm00001d029974_P001 | Maize | nucleus | 31.61 | 30.53 |
| Zm00001d000045_P001 | Maize | nucleus | 30.97 | 30.19 |
| EER94471 | Sorghum | nucleus | 31.29 | 30.12 |
| HORVU1Hr1G055420.1 | Barley | cytosol | 30.32 | 29.94 |
| TraesCS1A01G216300.1 | Wheat | nucleus | 30.0 | 29.15 |
| TraesCS1D01G218500.1 | Wheat | nucleus | 29.68 | 28.84 |
| CDX83420 | Canola | nucleus | 31.94 | 28.12 |
| VIT_00s0204g00020.t01 | Wine grape | nucleus | 34.52 | 27.23 |
| CDX95611 | Canola | nucleus | 30.65 | 26.91 |
| Os10t0564200-01 | Rice | nucleus | 29.03 | 26.79 |
| PGSC0003DMT400052836 | Potato | nucleus | 34.19 | 25.6 |
| Solyc08g007170.1.1 | Tomato | nucleus | 33.23 | 25.25 |
| CDX83751 | Canola | nucleus | 10.65 | 25.0 |
| CDY52087 | Canola | nucleus, plastid | 22.58 | 23.57 |
| CDY39785 | Canola | nucleus | 20.97 | 23.38 |
| CDX77381 | Canola | nucleus | 22.26 | 23.23 |
| CDY71514 | Canola | nucleus | 20.97 | 21.59 |
| CDX73485 | Canola | nucleus | 20.97 | 21.17 |
Protein Annotations
| EnsemblPlants:CDY42958 | EnsemblPlantsGene:GSBRNA2T00075735001 | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF18 | PFAM:PF13837 | ProteinID:CDY42958 |
| ProteinID:CDY42958.1 | SEG:seg | UniParc:UPI0004EE49F2 | UniProt:A0A078I1K5 | MapMan:15.5.20 | : |
Description
BnaA01g17960DBnaA01g17960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1K5]
Coordinates
chrLK032540:-:174121..175362
Molecular Weight (calculated)
34487.5 Da
IEP (calculated)
9.066
GRAVY (calculated)
-0.780
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTPDGSPVA MAVDPSTAVT VASTTTRRVP PPCWNDEETA ALVNAYKDKW FALRRGNLRA ADWDDVAAAV SSLHTLGGPA KSAIQCRHKI EKLRKRYRGE
101: KQRSLNRPGK FSSSWDLFPI LDAMELKGSH GKPSSGEFGG GFPLKSFGDR SFASHGFKAK NFSKPEANFS PEMDYDDEFD EGFNPRIQHS RSSSRANGYG
201: RKDGSYPRSN NTGVSNGYGS SSRFKHEQMN AADVESDPID EVVSSVKMLT EMFVRVENSK MEMMREMEKT RMEMELKHCQ MMLESQQQII GAFAEALSEK
301: KSTNARRPGS
101: KQRSLNRPGK FSSSWDLFPI LDAMELKGSH GKPSSGEFGG GFPLKSFGDR SFASHGFKAK NFSKPEANFS PEMDYDDEFD EGFNPRIQHS RSSSRANGYG
201: RKDGSYPRSN NTGVSNGYGS SSRFKHEQMN AADVESDPID EVVSSVKMLT EMFVRVENSK MEMMREMEKT RMEMELKHCQ MMLESQQQII GAFAEALSEK
301: KSTNARRPGS
001: MGFAPVTPAA VETYDPDVDH DDESNGLDGF RVRSKRSGKF SGGYSDSPRE VGDGYGVRSR ARSNMKMYGG FKSEFDSDHD SGSGFGLKRK YNGNPKVSAD
101: FDADSDDEIV LVPKATRLRT HGKPSSGDFS HGSGGGFPLK SFGDRNFASH GFKPKNFSKP EPNFSQDLDY DDEFDDDRAE REGFNPRIQS SRSSSRVNGY
201: SRKDGSYPRN TGASNGYGSS SRFKHEQMNA AAEVESDPID EVVSSVKMLT EMFVRVENSK MEMMREMEKS RMEMELKHCQ MMLESQQQII GAFAEALSEK
301: KSTNARRPVS
101: FDADSDDEIV LVPKATRLRT HGKPSSGDFS HGSGGGFPLK SFGDRNFASH GFKPKNFSKP EPNFSQDLDY DDEFDDDRAE REGFNPRIQS SRSSSRVNGY
201: SRKDGSYPRN TGASNGYGSS SRFKHEQMNA AAEVESDPID EVVSSVKMLT EMFVRVENSK MEMMREMEKS RMEMELKHCQ MMLESQQQII GAFAEALSEK
301: KSTNARRPVS
Arabidopsis Description
FIP2Protein FIP2 [Source:UniProtKB/Swiss-Prot;Acc:O23550]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.