Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42958 | Canola | nucleus | 46.77 | 46.77 |
| Bra040110.1-P | Field mustard | cytosol | 32.58 | 24.46 |
| CDY35602 | Canola | cytosol | 27.74 | 20.77 |
| VIT_00s0204g00020.t01 | Wine grape | nucleus | 19.68 | 15.52 |
| Zm00001d000045_P001 | Maize | nucleus | 15.81 | 15.41 |
| Zm00001d029974_P001 | Maize | nucleus | 15.81 | 15.26 |
| EER94471 | Sorghum | nucleus | 15.16 | 14.6 |
| HORVU1Hr1G055420.1 | Barley | cytosol | 14.19 | 14.01 |
| AT2G44730.1 | Thale cress | nucleus | 16.77 | 13.98 |
| Solyc08g007170.1.1 | Tomato | nucleus | 18.39 | 13.97 |
| TraesCS1B01G229500.1 | Wheat | nucleus | 14.19 | 13.88 |
| PGSC0003DMT400052836 | Potato | nucleus | 18.39 | 13.77 |
| Os10t0564200-01 | Rice | nucleus | 14.52 | 13.39 |
| TraesCS1D01G218500.1 | Wheat | nucleus | 13.55 | 13.17 |
| TraesCS1A01G216300.1 | Wheat | nucleus | 13.55 | 13.17 |
| AT3G54390.2 | Thale cress | nucleus | 12.58 | 12.5 |
| AT3G24860.1 | Thale cress | nucleus | 9.68 | 9.68 |
Protein Annotations
| MapMan:15.5.20 | EntrezGene:827414 | ProteinID:AEE83844.1 | ArrayExpress:AT4G17060 | EnsemblPlantsGene:AT4G17060 | RefSeq:AT4G17060 |
| TAIR:AT4G17060 | RefSeq:AT4G17060-TAIR-G | EnsemblPlants:AT4G17060.1 | TAIR:AT4G17060.1 | EMBL:BT033104 | ProteinID:CAB10486.1 |
| ProteinID:CAB80977.1 | Symbol:FIP2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005773 | RefSeq:NP_193439.1 |
| UniProt:O23550 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF18 |
| UniParc:UPI00000A1644 | SEG:seg | : | : | : | : |
Description
FIP2Protein FIP2 [Source:UniProtKB/Swiss-Prot;Acc:O23550]
Coordinates
chr4:-:9593381..9595350
Molecular Weight (calculated)
34435.6 Da
IEP (calculated)
5.957
GRAVY (calculated)
-0.986
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFAPVTPAA VETYDPDVDH DDESNGLDGF RVRSKRSGKF SGGYSDSPRE VGDGYGVRSR ARSNMKMYGG FKSEFDSDHD SGSGFGLKRK YNGNPKVSAD
101: FDADSDDEIV LVPKATRLRT HGKPSSGDFS HGSGGGFPLK SFGDRNFASH GFKPKNFSKP EPNFSQDLDY DDEFDDDRAE REGFNPRIQS SRSSSRVNGY
201: SRKDGSYPRN TGASNGYGSS SRFKHEQMNA AAEVESDPID EVVSSVKMLT EMFVRVENSK MEMMREMEKS RMEMELKHCQ MMLESQQQII GAFAEALSEK
301: KSTNARRPVS
101: FDADSDDEIV LVPKATRLRT HGKPSSGDFS HGSGGGFPLK SFGDRNFASH GFKPKNFSKP EPNFSQDLDY DDEFDDDRAE REGFNPRIQS SRSSSRVNGY
201: SRKDGSYPRN TGASNGYGSS SRFKHEQMNA AAEVESDPID EVVSSVKMLT EMFVRVENSK MEMMREMEKS RMEMELKHCQ MMLESQQQII GAFAEALSEK
301: KSTNARRPVS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.