Factsheet for PGSC0003DMT400052836

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037427
PGSC0003DMT400080000
PGSC0003DMT400080001
PGSC0003DMT400084922
PGSC0003DMT400094724

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17060.1	PGSC0003DMT400037427	AT4G00650.1	19429606
AT4G17060.1	PGSC0003DMT400080000	AT4G00650.1	19429606
AT4G17060.1	PGSC0003DMT400080001	AT4G00650.1	19429606
AT4G17060.1	PGSC0003DMT400084922	AT4G00650.1	19429606
AT4G17060.1	PGSC0003DMT400094724	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007170.1.1	Tomato	nucleus	82.37	83.58
VIT_00s0204g00020.t01	Wine grape	nucleus	32.85	34.61
CDY42958	Canola	nucleus	25.6	34.19
PGSC0003DMT400004269	Potato	plastid	26.57	33.43
TraesCS1D01G218500.1	Wheat	nucleus	22.95	29.78
TraesCS1A01G216300.1	Wheat	nucleus	22.95	29.78
HORVU1Hr1G055420.1	Barley	cytosol	22.46	29.62
Zm00001d000045_P001	Maize	nucleus	22.71	29.56
EER94471	Sorghum	nucleus	22.46	28.88
TraesCS1B01G229500.1	Wheat	nucleus	21.98	28.71
Zm00001d029974_P001	Maize	nucleus	22.22	28.66
PGSC0003DMT400051788	Potato	nucleus	21.98	27.91
Bra040110.1-P	Field mustard	cytosol	27.05	27.12
Os10t0564200-01	Rice	nucleus	21.74	26.79
CDY35602	Canola	cytosol	26.09	26.09
AT4G17060.1	Thale cress	nucleus	13.77	18.39
PGSC0003DMT400013829	Potato	nucleus	14.49	17.44

Protein Annotations

EnsemblPlants:PGSC0003DMT400052836	EnsemblPlantsGene:PGSC0003DMG400020508	EntrezGene:102592979	InterPro:IPR006578	InterPro:IPR017877	InterPro:MADF-dom
InterPro:Myb-like_dom	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF3	PFAM:PF13837	PFscan:PS50090
PGSC:PGSC0003DMG400020508	RefSeq:XP_006362480.1	SEG:seg	SMART:SM00595	UniParc:UPI000296A7BD	UniProt:M1BU20
MapMan:15.5.20	:	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400020508]

Coordinates

chr8:-:1041613..1043984

Molecular Weight (calculated)

46320.2 Da

IEP (calculated)

9.512

GRAVY (calculated)

-0.696

Length

414 amino acids

Sequence
(BLAST)

001: MSSNVDSTVV VAEDAVPEEK PPPPARRFPP PCWTQEETLA LIEAYRERWY ALRRGYLRTA DWDAVAATVT SRCPDASPAK TSAQCRHKME KLRQRYRAEK
101: QRSLSCPTGR FFSSWFFFDN MDAMENGTTV AAIRSNNQQI AEKQQTVTAV SGDGYALKTM IDQNLLKLKI NQKNGIASPP NFMFNHALAA TKSEKINFAT
201: RIPNGYCSYM DMGPSKQEHP HDLEFSSGYR MKNGISMKAK RTGRIIGDVN GFDQGGIKGG GNFVMNPSFD CDEGSEYNNG SNANDGFHIR NMGVSSSRRS
301: YNSGNVEQQP NLDSRFSPGL SKFGKKGGGG VGMKRGRDPV EEMVLSIKLL GEGFMKMEKM KMEMAKEVEQ MRMEMEMKRN EMILESQKQI VEAFVKVLGE
401: VHKNKNAKTV SPES

Best Arabidopsis Sequence Match ( AT2G44730.1 )
(BLAST)

001: MSDPDSPMNH DPIPDPSPLA PLPPPLSSSA HDDASTEPAS NTDLKSASIP TASKNSRRLP PPCWSLEETI ALIDAYRDKW YALNRGNLKA NHWEEVAEAV
101: GANCPDVILK KTAVQCRHKM EKLRKRYRTE IQRARSVPVA RFISSWVHFK RMEAMENRPE IKQGNESGDD DDHDDGNYTA RYQFSGGGGG ARTTPRFFNR
201: NGTAGSGGGG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID QKYTASPSAG VSSNPRAGRG IGAGGSSYGA RVVRIPEGGG KRGREMMMKT EEDDNDPMVE
301: IASAIKLLGD TLVRTEQTRM EMTREIEAMR MDTEMKRTKM ILESQQRIVE AFAKSLSDYT TTEEQDKKKK AR

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:O80512]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.