Factsheet for PGSC0003DMT400037427

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400036725
PGSC0003DMT400037427
PGSC0003DMT400048982
PGSC0003DMT400052836
PGSC0003DMT400080000
PGSC0003DMT400080001
PGSC0003DMT400084922
PGSC0003DMT400094724

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	PGSC0003DMT400048982	AT2G06005.1	19429606
AT4G00650.1	PGSC0003DMT400037427	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400080000	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400080001	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400084922	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400094724	AT4G00650.1	17138694
AT4G00650.1	PGSC0003DMT400037427	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400080000	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400080001	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400084922	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400094724	AT4G00650.1	19429606
AT4G00650.1	PGSC0003DMT400052836	AT4G17060.1	19429606
AT4G00650.1	PGSC0003DMT400036725	AT5G16320.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g042440.1.1	Tomato	nucleus, plastid	92.04	93.05
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	18.44	35.05
PGSC0003DMT400036725	Potato	nucleus	15.37	31.25
PGSC0003DMT400080001	Potato	nucleus	38.7	29.89
KRH63904	Soybean	nucleus	30.56	28.12
PGSC0003DMT400080000	Potato	nucleus	37.43	27.49
CDY05835	Canola	cytosol, nucleus, plastid	17.36	26.74
KRH54046	Soybean	nucleus	28.39	26.52
Bra035723.1-P	Field mustard	plastid	17.36	26.23
VIT_19s0014g00060.t01	Wine grape	nucleus	14.83	25.87
AT4G00650.1	Thale cress	plastid	14.65	25.8
PGSC0003DMT400094724	Potato	nucleus	35.44	25.13
PGSC0003DMT400084922	Potato	cytosol	17.9	25.0
CDY32645	Canola	nucleus	26.22	24.87
Bra029192.1-P	Field mustard	nucleus, plastid	25.86	24.36
CDY38847	Canola	nucleus, plastid	26.04	24.16
CDX71688	Canola	nucleus	25.5	24.1
PGSC0003DMT400071153	Potato	nucleus	16.82	17.06
PGSC0003DMT400077344	Potato	nucleus	15.73	16.93
PGSC0003DMT400053214	Potato	cytosol	16.46	16.67
PGSC0003DMT400047832	Potato	nucleus	15.01	15.6
EER93089	Sorghum	plastid	12.84	15.37
Os03t0851400-01	Rice	extracellular	11.57	14.61
TraesCS4A01G329000.1	Wheat	plastid	13.02	14.55
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	13.38	13.91
TraesCS5B01G543400.1	Wheat	plastid	12.84	13.63
TraesCS5D01G544800.1	Wheat	mitochondrion	13.02	12.83
PGSC0003DMT400065090	Potato	nucleus	13.38	12.17

Protein Annotations

EnsemblPlants:PGSC0003DMT400037427	EnsemblPlantsGene:PGSC0003DMG400014443	EntrezGene:102589537	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil
PANTHER:PTHR31791	PANTHER:PTHR31791:SF3	PFAM:PF07899	PGSC:PGSC0003DMG400014443	RefSeq:XP_006346621.1	SEG:seg
UniParc:UPI0002954144	UniProt:M1B5D7	MapMan:35.1	:	:	:

Description

Protein FRIGIDA [Source:PGSC_GENE;Acc:PGSC0003DMG400014443]

Coordinates

chr12:-:49294897..49302048

Molecular Weight (calculated)

61113.8 Da

IEP (calculated)

8.821

GRAVY (calculated)

-0.480

Length

553 amino acids

Sequence
(BLAST)

001: MENLAGSAVS QTSTATAPQP QTADTTPSPA SPPSASNQTS SEEKDSKSPD SQLETLCKTM CGKGLRSYIV SKLAEKNTLR EELTKALKLA PNAAKLVLSC
101: MGDFFAKRGK AFDKDAQMIA TREASALVLE CFLLMGFDVI DEGVKEEAAQ AAVIWRRRFV DERGIRKAST MDARGLLLLI GCFGIPQIFY NEDVRDLIRV
201: SNIREISTAL RRSNVLMEKI PEIIEGMVKH KMEVDAVDVA YTFGVEEKCS PCEILSSFLE ELKESLKKKK CQSHGSHAVV NEANKRELST MKSVIECLDA
301: HNIDPSKLIP RFRISDRIMS LEEKIARNDQ RREKMVQNLK FDETGLSRRF EERRAKRTRI LGEEYQRPVN HISSQRPLLA GRPASHIYGY SVSPSALPRS
401: VAGPIHDTVP GSPAASRGGM VMGGVSSGII RSTNNALQAG AYGGFRGRIP FEGKAGQIRS YNNQLYEWQE NASMHEREVS HNYGYGSSPS WQGSMELPNP
501: VPVGPGYQTA ASDPYQLAST GRSSPYQNRG VVPSVYHYSS YLYPGTYYPQ GMQ

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.