Factsheet for PGSC0003DMT400047832

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g071340.1.1	Tomato	nucleus	85.34	94.78
VIT_11s0016g04070.t01	Wine grape	nucleus	47.56	47.47
KRH41582	Soybean	nucleus	41.92	42.88
KRH60292	Soybean	nucleus	41.73	42.69
GSMUA_Achr10P...	Banana	nucleus	37.59	38.54
PGSC0003DMT400077344	Potato	nucleus	28.95	29.96
PGSC0003DMT400065090	Potato	nucleus	28.57	25.0
PGSC0003DMT400071153	Potato	nucleus	25.19	24.59
PGSC0003DMT400053214	Potato	cytosol	25.0	24.36
Os01t0181000-00	Rice	nucleus	26.69	23.87
Zm00001d039594_P001	Maize	extracellular, plasma membrane	26.69	22.22
KXG31679	Sorghum	nucleus	26.32	22.12
TraesCS3A01G117300.1	Wheat	cytosol, nucleus, plastid	26.5	21.56
HORVU3Hr1G021380.1	Barley	nucleus	15.6	21.01
TraesCS3D01G119200.1	Wheat	cytosol, nucleus, plastid	25.94	20.94
TraesCS3B01G136400.1	Wheat	cytosol, nucleus, plastid	25.75	20.82
HORVU0Hr1G036250.1	Barley	cytosol	7.33	18.66
HORVU3Hr1G033120.2	Barley	nucleus	8.65	17.04
HORVU3Hr1G033180.1	Barley	cytosol, nucleus	4.89	15.95
PGSC0003DMT400037427	Potato	nucleus, plastid	15.6	15.01
PGSC0003DMT400084922	Potato	cytosol	10.15	13.64
PGSC0003DMT400080001	Potato	nucleus	16.73	12.43
PGSC0003DMT400080000	Potato	nucleus	16.73	11.82
PGSC0003DMT400094724	Potato	nucleus	15.6	10.64
PGSC0003DMT400036725	Potato	nucleus	3.57	6.99

Protein Annotations

EnsemblPlants:PGSC0003DMT400047832	EnsemblPlantsGene:PGSC0003DMG400018590	EntrezGene:102588299	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil
PANTHER:PTHR31791	PANTHER:PTHR31791:SF10	PFAM:PF07899	PGSC:PGSC0003DMG400018590	RefSeq:XP_006340271.1	SEG:seg
UniParc:UPI000295E3BA	UniProt:M1BLI0	MapMan:35.1	:	:	:

Description

ABI3-interacting protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400018590]

Coordinates

chr11:-:42673255..42678615

Molecular Weight (calculated)

58180.3 Da

IEP (calculated)

9.421

GRAVY (calculated)

-0.440

Length

532 amino acids

Sequence
(BLAST)

001: MAADTVTNLE PIHTFFNNLE ARQTLLTTIT DLNKALTTHF TNINNTLCQK SETLDTHVKI FKDKTEDALL KIQNRENALP DRESSMGARI VEMKDAAISE
101: IESLGDLSEK SLAEVLRSYC KRMDASGLVG FIQTKRKEPT GLRMEIAAAL ESSVDPMRLI LDAAEEFVGR KVEKKAILAD RRWACDMLIQ SVVPAAEGGY
201: GAGRSLKERA ARVLEKWKGV LGGGDRSSGV CAAEATMFLQ LVIAFALKER FEEEFLRKLV LEFANRKDMP KLAVAFGFGN KIGDIIEELL KSGKEVEAVY
301: FATESGLSER YPPLSLLKLS LRNCRRNANN ISKKGKFSSA AVDKANSIEL EATKALIKCV EDHKLEQEFT LEGLKQRVTE LEQAKAKKKM GTTPENKPSK
401: KRGRGGGTGR SSGPSTSRPV KSGRSSNATA FRSRNPPQSH QAPPIRYTGA HSYTSQSVYE APSTVSYAPV YSGTHTQSPA ILAPQYGYAL QEAGVSGVRS
501: YHGSYGGEAG YSAYDYALTP AAPAYPPSYP PQ

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.