Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G119200.1 | Wheat | cytosol, nucleus, plastid | 67.06 | 60.55 |
| TraesCS3B01G136400.1 | Wheat | cytosol, nucleus, plastid | 66.72 | 60.33 |
| TraesCS3A01G117300.1 | Wheat | cytosol, nucleus, plastid | 66.05 | 60.09 |
| KXG31679 | Sorghum | nucleus | 62.35 | 58.61 |
| Zm00001d039594_P001 | Maize | extracellular, plasma membrane | 60.84 | 56.65 |
| HORVU3Hr1G021380.1 | Barley | nucleus | 35.13 | 52.91 |
| HORVU3Hr1G033120.2 | Barley | nucleus | 21.68 | 47.78 |
| HORVU0Hr1G036250.1 | Barley | cytosol | 16.47 | 46.89 |
| HORVU3Hr1G033180.1 | Barley | cytosol, nucleus | 11.09 | 40.49 |
| GSMUA_Achr10P... | Banana | nucleus | 32.1 | 36.8 |
| KRH60292 | Soybean | nucleus | 26.39 | 30.19 |
| KRH41582 | Soybean | nucleus | 26.05 | 29.81 |
| VIT_11s0016g04070.t01 | Wine grape | nucleus | 26.55 | 29.64 |
| Os07t0173200-02 | Rice | cytosol | 25.88 | 28.84 |
| PGSC0003DMT400047832 | Potato | nucleus | 23.87 | 26.69 |
| Os03t0794900-01 | Rice | nucleus | 24.37 | 26.36 |
| Solyc11g071340.1.1 | Tomato | nucleus | 20.67 | 25.68 |
| Os09t0248300-01 | Rice | cytosol | 20.67 | 22.69 |
| Os09t0248200-01 | Rice | cytosol | 20.67 | 22.57 |
| Os07t0592300-01 | Rice | nucleus | 18.32 | 17.93 |
| Os03t0193225-01 | Rice | plasma membrane | 14.96 | 17.32 |
| Os03t0851400-01 | Rice | extracellular | 11.43 | 15.53 |
Protein Annotations
| EnsemblPlants:Os01t0181000-00 | EnsemblPlantsGene:Os01g0181000 | EntrezGene:9267183 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida | ncoils:Coil |
| PANTHER:PTHR31791 | PANTHER:PTHR31791:SF10 | PFAM:PF07899 | ProteinID:BAD68038.1 | ProteinID:BAD68086.1 | ProteinID:BAS70731.1 |
| RefSeq:XP_015617266.1 | SEG:seg | UniParc:UPI0000457D42 | UniProt:Q5VR39 | MapMan:35.1 | : |
Description
Frigida-like domain containing protein. (Os01t0181000-00)
Coordinates
chr1:-:4272846..4276299
Molecular Weight (calculated)
64333.0 Da
IEP (calculated)
4.875
GRAVY (calculated)
-0.528
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATGDSAAA AGEVRRLLAH LDSHQQLLAS CHDAWSRALA HFASLDEDLA ARSASLDDAL AAAGASTSES LAALEAREAA VPARLAEAEA ALSAAVAEAG
101: SAEPPPADVR GALRWMCGRM DAPALWRFMA ARRRELAAVR KEVGPAVAAS VDPPRLVLDA LADFLAAEDG AGEDQFWVLG ILLRSLFDSD GRKPPEIGDT
201: LVERAAGVAK NWSEKFGIKM ELYAPDNNEV EMTEAPLVEN ATATEKKEEH VDEEEEEEEE DPEEMVPASE EEADAEEVEK EEEDPEEVEK EGGEAEAKVA
301: NAAKTGEVEK RKVEEDKKAS GREVKEGEKG GQAEVQIFLQ MVAAFGLKDR YDVDFLRRLL VDNGRRRELA RIACVLGFED SLRDVIEEFI KSGNEIEAIH
401: IAHEAGLLER FPPVPLLKSY IKRITNKTQV ALRGGRHSNS VVEEANNSEC NAYKSIIRCV ETCQLTSAFN LDGIRKKVAR MEKEKADRRK PSGMNRFQNN
501: KRARGASGPQ SFPPSKYSRG SNSNYGSSFR NPASHSFPYT DRAGFVGPAP GARPHFAPGS SMGTRRAGVL YGGPGATFGA GHGYGAGAGH QSYHH
101: SAEPPPADVR GALRWMCGRM DAPALWRFMA ARRRELAAVR KEVGPAVAAS VDPPRLVLDA LADFLAAEDG AGEDQFWVLG ILLRSLFDSD GRKPPEIGDT
201: LVERAAGVAK NWSEKFGIKM ELYAPDNNEV EMTEAPLVEN ATATEKKEEH VDEEEEEEEE DPEEMVPASE EEADAEEVEK EEEDPEEVEK EGGEAEAKVA
301: NAAKTGEVEK RKVEEDKKAS GREVKEGEKG GQAEVQIFLQ MVAAFGLKDR YDVDFLRRLL VDNGRRRELA RIACVLGFED SLRDVIEEFI KSGNEIEAIH
401: IAHEAGLLER FPPVPLLKSY IKRITNKTQV ALRGGRHSNS VVEEANNSEC NAYKSIIRCV ETCQLTSAFN LDGIRKKVAR MEKEKADRRK PSGMNRFQNN
501: KRARGASGPQ SFPPSKYSRG SNSNYGSSFR NPASHSFPYT DRAGFVGPAP GARPHFAPGS SMGTRRAGVL YGGPGATFGA GHGYGAGAGH QSYHH
001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
Arabidopsis Description
FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.