Factsheet for Os07t0173200-02

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0253300-01
Os01t0350900-02
Os01t0876800-00
Os01t0958500-01
Os03t0268100-01
Os03t0411000-01
Os03t0794900-01
Os05t0154600-01
Os06t0206100-01
Os07t0173200-02
Os08t0320400-01
Os09t0248200-01
Os09t0248300-01
Os09t0255400-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22440.1	Os01t0876800-00	AT1G33470.1	21798944
AT3G22440.1	Os01t0958500-01	AT1G33470.1	21798944
AT3G22440.1	Os08t0320400-01	AT2G04400.1	15714319
AT3G22440.1	Os09t0255400-02	AT2G04400.1	15714319
AT3G22440.1	Os01t0253300-01	AT4G02150.1	21798944
AT3G22440.1	Os03t0794900-01	AT4G14900.1	21798944
AT3G22440.1	Os07t0173200-02	AT4G14900.1	21798944
AT4G14900.1	Os01t0350900-02	AT2G47700.1	21798944
AT4G14900.1	Os05t0154600-01	AT2G47700.1	21798944
AT4G14900.1	Os03t0411000-01	AT3G13990.1	21798944
AT4G14900.1	Os06t0206100-01	AT3G13990.1	21798944
AT4G14900.1	Os09t0248200-01	AT5G48385.1	21798944
AT4G14900.1	Os09t0248300-01	AT5G48385.1	21798944
AT4G14900.1	Os03t0268100-01	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007835_P002	Maize	cytosol, endoplasmic reticulum, nucleus	80.34	74.22
Zm00001d018911_P001	Maize	cytosol	82.58	72.65
Os03t0794900-01	Rice	nucleus	73.78	71.64
KXG34492	Sorghum	nucleus	82.02	70.87
GSMUA_AchrUn_...	Banana	cytosol, nucleus	28.65	65.38
GSMUA_Achr2P12700_001	Banana	nucleus	56.18	61.35
GSMUA_Achr7P01520_001	Banana	nucleus	55.43	60.66
KRG91301	Soybean	cytosol	49.06	50.0
VIT_05s0020g03470.t01	Wine grape	nucleus	48.88	50.0
KRH35520	Soybean	cytosol	49.25	49.62
CDY46317	Canola	cytosol, nucleus, plastid	45.51	46.29
CDY34252	Canola	cytosol, nucleus, plastid	44.57	45.59
Solyc09g076050.2.1	Tomato	nucleus	43.82	45.53
PGSC0003DMT400077344	Potato	nucleus	43.63	45.33
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	45.32	45.32
AT3G22440.1	Thale cress	cytosol, nucleus, plastid	44.38	44.55
AT4G14900.1	Thale cress	nucleus	43.63	43.8
CDY38318	Canola	nucleus	34.27	34.46
Os09t0248300-01	Rice	cytosol	27.72	27.31
Os09t0248200-01	Rice	cytosol	26.97	26.42
Os01t0181000-00	Rice	nucleus	28.84	25.88
Os07t0592300-01	Rice	nucleus	26.78	23.52
Os03t0193225-01	Rice	plasma membrane	21.72	22.57
Os03t0851400-01	Rice	extracellular	13.67	16.67

Protein Annotations

EMBL:AK065275	EnsemblPlants:Os07t0173200-02	EnsemblPlantsGene:Os07g0173200	EntrezGene:4342522	GO:GO:0000003	GO:GO:0007275
GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida
ncoils:Coil	PANTHER:PTHR31791	PANTHER:PTHR31791:SF11	PFAM:PF07899	ProteinID:BAC83627.1	ProteinID:BAT00259.1
RefSeq:XP_015646884.1	SEG:seg	UniParc:UPI00001BF3BF	UniProt:Q6ZA60	MapMan:35.1	:

Description

Hypothetical conserved gene. (Os07t0173200-02);Frigida-like family protein. (Os07t0173200-03)

Coordinates

chr7:-:3847014..3850323

Molecular Weight (calculated)

57844.4 Da

IEP (calculated)

8.135

GRAVY (calculated)

-0.404

Length

534 amino acids

Sequence
(BLAST)

001: MASPAAEGDA VSAGFAELER QQQLLASCTR LYKQLEEHFA SLERGLAARS DSLRHKRRAA EARASAAMDS LRRREASIDG SVSRALDHLD DLASASSVPS
101: DAAAAAEGVA ESLRAMCARM DSAGFFGFVV ARRKEVDALR AEMPPALKCC VDPAKFVMDA VADVFPVDRR EAKNPTDLAW ACVLILEAAV PALADPDPEI
201: GAARLLVPRA ARERARGMAR EWKEAAERKG GVEWTKPPDA HAFLQHVATF AVAEREDRGI YRRIVVSFSW RRQMPRLALT LGLEEDMADI IEELIAKGQQ
301: LDAVNFAYEA GLQEKFPPVP LLKSYLADSK KTSCTVSDNS STSSGQSGSN ANKKEQSVLR AVIKCIEDRK LEAEFPLEDL QRQLEELEKA KTEKKKATSS
401: ASSGGSSGPA TKRIRASNGG PMPPAKAGRL TNNACVSSTP AATTFVRSPS HTSYAMASPY PYDRPVGHGL YCNQSPPAIR EPYVYPAKEV TNFAPGLPYS
501: SPPISYPHAY GGYNNGMGAY NNGMAPAFHQ AYYR

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.