Factsheet for Os03t0794900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0253300-01
Os01t0350900-02
Os01t0876800-00
Os01t0958500-01
Os03t0268100-01
Os03t0411000-01
Os03t0794900-01
Os05t0154600-01
Os06t0206100-01
Os07t0173200-02
Os08t0320400-01
Os09t0248200-01
Os09t0248300-01
Os09t0255400-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22440.1	Os01t0876800-00	AT1G33470.1	21798944
AT3G22440.1	Os01t0958500-01	AT1G33470.1	21798944
AT3G22440.1	Os08t0320400-01	AT2G04400.1	15714319
AT3G22440.1	Os09t0255400-02	AT2G04400.1	15714319
AT3G22440.1	Os01t0253300-01	AT4G02150.1	21798944
AT3G22440.1	Os03t0794900-01	AT4G14900.1	21798944
AT3G22440.1	Os07t0173200-02	AT4G14900.1	21798944
AT4G14900.1	Os01t0350900-02	AT2G47700.1	21798944
AT4G14900.1	Os05t0154600-01	AT2G47700.1	21798944
AT4G14900.1	Os03t0411000-01	AT3G13990.1	21798944
AT4G14900.1	Os06t0206100-01	AT3G13990.1	21798944
AT4G14900.1	Os09t0248200-01	AT5G48385.1	21798944
AT4G14900.1	Os09t0248300-01	AT5G48385.1	21798944
AT4G14900.1	Os03t0268100-01	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G442300.1	Wheat	cytosol	75.82	75.54
HORVU5Hr1G104870.1	Barley	cytosol	76.18	75.5
TraesCS5B01G437500.2	Wheat	cytosol	76.18	75.5
TraesCS5A01G434500.1	Wheat	cytosol	75.82	75.27
Os07t0173200-02	Rice	cytosol	71.64	73.78
GSMUA_Achr2P12700_001	Banana	nucleus	52.55	59.1
GSMUA_Achr7P01520_001	Banana	nucleus	52.0	58.61
GSMUA_AchrUn_...	Banana	cytosol, nucleus	23.82	55.98
VIT_05s0020g03470.t01	Wine grape	nucleus	46.36	48.85
KRG91301	Soybean	cytosol	45.64	47.9
KRH35520	Soybean	cytosol	45.82	47.55
CDY46317	Canola	cytosol, nucleus, plastid	43.45	45.52
CDY34252	Canola	cytosol, nucleus, plastid	42.73	45.02
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	43.45	44.76
Solyc09g076050.2.1	Tomato	nucleus	41.82	44.75
PGSC0003DMT400077344	Potato	nucleus	41.64	44.55
AT3G22440.1	Thale cress	cytosol, nucleus, plastid	43.09	44.55
AT4G14900.1	Thale cress	nucleus	41.45	42.86
CDY38318	Canola	nucleus	34.18	35.4
Os09t0248300-01	Rice	cytosol	25.45	25.83
Os09t0248200-01	Rice	cytosol	24.55	24.77
Os01t0181000-00	Rice	nucleus	26.36	24.37
Os07t0592300-01	Rice	nucleus	26.18	23.68
Os03t0193225-01	Rice	plasma membrane	20.73	22.18
Os03t0851400-01	Rice	extracellular	13.27	16.67

Protein Annotations

EMBL:AK102390	EnsemblPlants:Os03t0794900-01	EnsemblPlantsGene:Os03g0794900	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil
PANTHER:PTHR31791	PANTHER:PTHR31791:SF11	PFAM:PF07899	ProteinID:AAT76425.1	ProteinID:ABF99329.1	ProteinID:BAF13457.1
ProteinID:BAS86824.1	SEG:seg	UniParc:UPI00003E1FD1	UniProt:Q6F379	MapMan:35.1	:

Description

Frigida-like family protein. (Os03t0794900-01);Similar to Proline-rich protein (Fragment). (Os03t0794900-02);Hypothetical conserved gene. (Os03t0794900-03)

Coordinates

chr3:+:33061357..33064910

Molecular Weight (calculated)

59521.2 Da

IEP (calculated)

8.116

GRAVY (calculated)

-0.419

Length

550 amino acids

Sequence
(BLAST)

001: MAAPAAESAV VGVGVDSATS AAVRDGFAEL ERQQQLLATC TRLYQQLTEH FGSLERRLAA RSETLRTKRR FLDVRTSRRL EALRRREASI DGSVSLALSR
101: LDSLAKGDAG TTGSASADAA GIAEGLRSLC ASMDSAGFFT FVVARRKEVD ALRAELPDAL KRCVDPARFA MDAVSEVFPI DKRAVRSPTD LAWACVLILE
201: AVVPSLADPD PEIGAARPMV PQAARERARG MAREWKDAAE KKGGVEGAKP PDAHAFLQHV ATFAVAEKED KELYRRIVVS FSWRRQMPRL AITLGLEDEM
301: DDIIEELITK GQQLDAVNFA YEAGLQEKFP PAPLLKAYLE DSKKIPSNSD NLSTSTGQSG SNANKKEQSA LRAVIKCVED HKLEAEFPLE DLRERLEELE
401: KAKTEKKKAA SSSSSGGSSG PANKRIRAST GGPMPPAKAG RLTDYTGTPS SPATTTTNAT FIRSPSHASY GTASPYSYDR PAAHPLYCGQ NTLAMREPYA
501: YHHPSEVSSV GLGMSYPSPP ITYPAYAGYS NGIGYSNAMA PAFHHQAYYR

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.