Factsheet for Os03t0268100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0186400-01
Os02t0736100-01
Os03t0268100-01
Os04t0550400-01
Os06t0251700-01
Os08t0428400-01
Os10t0181700-01
Os11t0311300-03
Os11t0621500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59210.1	Os11t0311300-03	AT1G60080.1	21798944
AT5G59210.1	Os02t0736100-01	AT1G68060.1	21798944
AT5G59210.1	Os06t0251700-01	AT1G68060.1	21798944
AT5G59210.1	Os11t0621500-01	AT1G72630.1	21798944
AT5G59210.1	Os04t0550400-01	AT2G44950.1	21798944
AT5G59210.1	Os08t0428400-01	AT3G17860.1	21798944
AT5G59210.1	Os02t0186400-01	AT4G32190.1	21798944
AT5G59210.1	Os10t0181700-01	AT4G36290.1	21798944
AT5G59210.1	Os03t0268100-01	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G093700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	83.37	83.94
TraesCS4D01G211400.1	Wheat	cytosol	82.92	83.48
EER92496	Sorghum	nucleus	82.7	83.45
TraesCS4B01G210700.2	Wheat	cytosol	81.8	83.11
Zm00001d047834_P004	Maize	cytosol	77.53	73.09
HORVU4Hr1G060500.11	Barley	cytosol, nucleus	74.83	67.14
Zm00001d028569_P002	Maize	cytosol	80.67	61.79
GSMUA_Achr2P16570_001	Banana	nucleus	59.1	59.91
VIT_06s0004g05490.t01	Wine grape	nucleus	56.18	55.93
AT5G59210.1	Thale cress	nucleus	52.36	53.69
CDY22263	Canola	cytosol	11.91	53.54
KRH23112	Soybean	nucleus	50.56	51.96
KRH10215	Soybean	cytosol	50.34	51.73
CDY02864	Canola	extracellular, golgi, vacuole	37.98	51.68
Solyc09g055760.2.1	Tomato	nucleus	48.09	48.53

Protein Annotations

EnsemblPlants:Os03t0268100-01	EnsemblPlantsGene:Os03g0268100	EntrezGene:4332370	ncoils:Coil	PANTHER:PTHR45393	ProteinID:ABF95167.1
ProteinID:BAF11584.1	ProteinID:BAS83437.1	ProteinID:EEE58764.1	RefSeq:XP_015630204.1	SEG:seg	UniParc:UPI0000DB41A2
UniProt:Q10NJ2	MapMan:35.2	:	:	:	:

Description

Similar to T-snare. (Os03t0268100-01)

Coordinates

chr3:-:8892244..8895472

Molecular Weight (calculated)

50429.7 Da

IEP (calculated)

4.989

GRAVY (calculated)

-0.767

Length

445 amino acids

Sequence
(BLAST)

001: MEANHASRGR RTLEEIRQKR AAERMQQQHN PAAAASLVDP YGNPGAGAEL LGRVRELENG NIALERENQM LLSKIAEKEV EKDSLVNRLN DLERNIVPSL
101: KKAVNDISLE KDAAAVAKED ALAQLRSMKK RLKEAEEEQY RAEEDSASLR AQLNTLQQQV MSNSYTGFPV GVSNEHILAM EKEVENLQAQ LKQESLLRQQ
201: EQQKLSEESL LRQQEQQKLT GEQSHAASLV AEKKELEEKI AALTKKASDE ASEFAARKAF SMEDREKLES QLHDMALMVE RLEGSRQKLL MEIDSQSSEI
301: EKLFEENSAL STSYQEAVAV TMQWENQVKD CLKQNEELRS HLEKLRLEQA TLLKTSNTTI QPDGQNETSI SFPPEFVTEN LSLKDQLIKE QSRSEGLSAE
401: IMKLSAELRK AVQAQNNLAR LYRPVLRGIE SNLMKMKQET YATIQ

Best Arabidopsis Sequence Match ( AT5G59210.1 )
(BLAST)

001: MESHHASLGR RTLEEIRQKR AAQRLSKASS GPDLSEIPNP ADFPVIRKSE SGNRLSETDV GALYSQLKEL QKKNAEMEER NKILSSKLQT KEVENESLET
101: RLNVLEQNTV PSLRKALKEI AMEKDAAVVL REDLSAQVRT LKRRVNQAEE EQYRAEEDAA SLRAELNSIQ QQAMGNSFAG MSPMGVSPDQ LPILEKEMAN
201: LKLELQKESV LRQQEQHRLA EEQTRVASLM SEKQELEQKI SVLSSRASEV SESGQKVFSV EDKEKLEKQL HDMAVALERL ESSRQKLLME IDNQSSEIEK
301: LFEENSNLSA SYQESINISN QWENQVKECL KQNVELREVL DKLRTEQAGS FSRGPSEFEA NGSHGTDTLS LKGELAKEQS RAESLSAQVL QLSAQLQQAT
401: QAYNGLMRIY KPVLRNIESS LIKLKQDGSV TVAQ

Arabidopsis Description

AT5g59210/mnc17_100 [Source:UniProtKB/TrEMBL;Acc:Q8RY08]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.