Factsheet for Solyc09g055760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005330.2.1
Solyc02g084700.2.1
Solyc03g118540.2.1
Solyc04g008040.2.1
Solyc05g017980.2.1
Solyc06g068930.1.1
Solyc06g075390.2.1
Solyc08g022030.2.1
Solyc09g055760.2.1
Solyc10g080130.1.1
Solyc11g013370.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59210.1	Solyc06g075390.2.1	AT1G60080.1	21798944
AT5G59210.1	Solyc10g080130.1.1	AT1G60080.1	21798944
AT5G59210.1	Solyc01g005330.2.1	AT1G68060.1	21798944
AT5G59210.1	Solyc04g008040.2.1	AT1G68060.1	21798944
AT5G59210.1	Solyc05g017980.2.1	AT1G68060.1	21798944
AT5G59210.1	Solyc11g013370.1.1	AT2G44950.1	21798944
AT5G59210.1	Solyc03g118540.2.1	AT3G17860.1	21798944
AT5G59210.1	Solyc06g068930.1.1	AT3G17860.1	21798944
AT5G59210.1	Solyc08g022030.2.1	AT4G32190.1	21798944
AT5G59210.1	Solyc02g084700.2.1	AT4G36290.1	21798944
AT5G59210.1	Solyc09g055760.2.1	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g05490.t01	Wine grape	nucleus	63.49	62.64
AT5G59210.1	Thale cress	nucleus	60.09	61.06
KRH23112	Soybean	nucleus	59.41	60.51
KRH10215	Soybean	cytosol	58.73	59.82
CDY22263	Canola	cytosol	12.47	55.56
GSMUA_Achr2P16570_001	Banana	nucleus	52.38	52.62
CDY02864	Canola	extracellular, golgi, vacuole	38.78	52.29
TraesCS4A01G093700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	48.53	48.42
TraesCS4D01G211400.1	Wheat	cytosol	48.53	48.42
TraesCS4B01G210700.2	Wheat	cytosol	47.85	48.17
Os03t0268100-01	Rice	nucleus	48.53	48.09
EER92496	Sorghum	nucleus	46.71	46.71
Zm00001d047834_P004	Maize	cytosol	47.17	44.07
HORVU4Hr1G060500.11	Barley	cytosol, nucleus	44.67	39.72
Zm00001d028569_P002	Maize	cytosol	47.17	35.8

Protein Annotations

EnsemblPlants:Solyc09g055760.2.1	EnsemblPlantsGene:Solyc09g055760.2	ncoils:Coil	PANTHER:PTHR45393	SEG:seg	UniParc:UPI000276AF6F
UniProt:K4CT72	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr9:-:44416584..44428928

Molecular Weight (calculated)

49657.3 Da

IEP (calculated)

6.240

GRAVY (calculated)

-0.618

Length

441 amino acids

Sequence
(BLAST)

001: MESRHVSLGR RTLEEIRQRR AAERLSKMSS GPDLAKPEVL GITKSRSATR LSENDITALV SQLKVVQKQN TQLDEENRAF ASKLQTKEVE NNMLQKRLND
101: LEQITIPSLR KALKDVAMEK DAAVVAREDL SALLRTIKKR LKEVEEEQYR AEEDAGSLRA ELNSLQQQAL TGPISGLTSM NFPPDCMQAM EKELANLKSQ
201: LEQVTLLRQQ ERQQLVEEIA HVSALNSQKQ DLEEKLAVMS KKVSGEVTGK ASQKTFSEGD KVRLEKQLHD MAVAIERLES SRQKLLMEVD SQSSEIERLF
301: EENSDLSSAH QEALGVAVQW ENQVKDCLKQ NEELRVMLDK LRNDQTAIST ANNNLIQQGV KGSKNEIQGI EYADIISIKG SLAKEQSKTE ALSAEILLLN
401: ARVQQATQAY NGLTRIYKPL LWNIENSLVK LKQDSSTVRV Q

Best Arabidopsis Sequence Match ( AT5G59210.1 )
(BLAST)

001: MESHHASLGR RTLEEIRQKR AAQRLSKASS GPDLSEIPNP ADFPVIRKSE SGNRLSETDV GALYSQLKEL QKKNAEMEER NKILSSKLQT KEVENESLET
101: RLNVLEQNTV PSLRKALKEI AMEKDAAVVL REDLSAQVRT LKRRVNQAEE EQYRAEEDAA SLRAELNSIQ QQAMGNSFAG MSPMGVSPDQ LPILEKEMAN
201: LKLELQKESV LRQQEQHRLA EEQTRVASLM SEKQELEQKI SVLSSRASEV SESGQKVFSV EDKEKLEKQL HDMAVALERL ESSRQKLLME IDNQSSEIEK
301: LFEENSNLSA SYQESINISN QWENQVKECL KQNVELREVL DKLRTEQAGS FSRGPSEFEA NGSHGTDTLS LKGELAKEQS RAESLSAQVL QLSAQLQQAT
401: QAYNGLMRIY KPVLRNIESS LIKLKQDGSV TVAQ

Arabidopsis Description

AT5g59210/mnc17_100 [Source:UniProtKB/TrEMBL;Acc:Q8RY08]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.