Factsheet for Solyc06g068930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g057200.2.1
Solyc01g067460.1.1
Solyc02g065630.2.1
Solyc03g118540.2.1
Solyc03g122190.2.1
Solyc04g015010.2.1
Solyc05g052620.2.1
Solyc06g054570.1.1
Solyc06g060970.1.1
Solyc06g068930.1.1
Solyc07g042170.2.1
Solyc08g005050.2.1
Solyc08g076930.1.1
Solyc08g077900.2.1
Solyc08g077910.2.1
Solyc11g012660.1.1
Solyc12g009220.1.1
Solyc12g049400.1.1
Solyc12g098990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48500.1	Solyc07g042170.2.1	AT1G19180.1	19309455
AT1G48500.1	Solyc12g009220.1.1	AT1G19180.1	19309455
AT1G48500.1	Solyc08g005050.2.1	AT1G32640.1	19309455
AT1G48500.1	Solyc08g076930.1.1	AT1G32640.1	19309455
AT1G48500.1	Solyc03g118540.2.1	AT1G48500.1	19309455
AT1G48500.1	Solyc06g068930.1.1	AT1G48500.1	19309455
AT1G48500.1	Solyc03g118540.2.1	AT3G17860.1	19309455
AT1G48500.1	Solyc06g068930.1.1	AT3G17860.1	19309455
AT3G17860.1	Solyc03g122190.2.1	AT1G17380.1	19309455
AT3G17860.1	Solyc12g049400.1.1	AT1G17380.1	19309455
AT3G17860.1	Solyc07g042170.2.1	AT1G19180.1	19309455
AT3G17860.1	Solyc12g009220.1.1	AT1G19180.1	19309455
AT3G17860.1	Solyc08g005050.2.1	AT1G32640.1	17637675
AT3G17860.1	Solyc08g076930.1.1	AT1G32640.1	17637675
AT3G17860.1	Solyc08g005050.2.1	AT1G32640.1	19309455
AT3G17860.1	Solyc08g076930.1.1	AT1G32640.1	19309455
AT3G17860.1	Solyc03g118540.2.1	AT1G48500.1	19309455
AT3G17860.1	Solyc06g068930.1.1	AT1G48500.1	19309455
AT3G17860.1	Solyc02g065630.2.1	AT1G67170.1	21798944
AT3G17860.1	Solyc03g122190.2.1	AT1G72450.1	19309455
AT3G17860.1	Solyc12g049400.1.1	AT1G72450.1	19309455
AT3G17860.1	Solyc07g042170.2.1	AT1G74950.1	19309455
AT3G17860.1	Solyc12g009220.1.1	AT1G74950.1	19309455
AT3G17860.1	Solyc05g052620.2.1	AT2G39940.1	17637675
AT3G17860.1	Solyc05g052620.2.1	AT2G39940.1	18547396
AT3G17860.1	Solyc05g052620.2.1	AT2G39940.1	19309455
AT3G17860.1	Solyc01g057200.2.1	AT3G06430.1	21798944
AT3G17860.1	Solyc12g098990.1.1	AT3G06430.1	21798944
AT3G17860.1	Solyc03g118540.2.1	AT3G17860.1	19151223
AT3G17860.1	Solyc06g068930.1.1	AT3G17860.1	19151223
AT3G17860.1	Solyc03g118540.2.1	AT3G17860.1	19309455
AT3G17860.1	Solyc06g068930.1.1	AT3G17860.1	19309455
AT3G17860.1	Solyc01g067460.1.1	AT4G15700.1	21798944
AT3G17860.1	Solyc06g054570.1.1	AT4G15700.1	21798944
AT3G17860.1	Solyc06g060970.1.1	AT4G17030.1	21798944
AT3G17860.1	Solyc08g077900.2.1	AT4G17030.1	21798944
AT3G17860.1	Solyc08g077910.2.1	AT4G17030.1	21798944
AT3G17860.1	Solyc04g015010.2.1	AT4G17220.1	21798944
AT3G17860.1	Solyc11g012660.1.1	AT4G17220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074101	Potato	nucleus	60.16	58.5
Solyc03g118540.2.1	Tomato	cytosol	39.84	30.06
CDY72405	Canola	plastid	16.67	26.45
CDX95810	Canola	nucleus	30.08	22.09
AT3G17860.1	Thale cress	nucleus	31.3	21.88
Bra021281.1-P	Field mustard	nucleus	31.3	21.81
CDY18478	Canola	nucleus	31.3	21.81
CDX92171	Canola	nucleus	29.67	21.73
Bra022254.1-P	Field mustard	nucleus	29.27	21.49
Solyc01g005440.2.1	Tomato	cytosol	26.42	21.04
AT1G48500.1	Thale cress	nucleus	25.61	20.32
KRH39044	Soybean	nucleus	31.3	19.95
Zm00001d032009_P001	Maize	plastid	9.76	17.91
VIT_17s0000g02230.t01	Wine grape	nucleus	28.46	17.68
EER98873	Sorghum	nucleus	27.24	16.42
Zm00001d020409_P002	Maize	nucleus	26.83	15.98
GSMUA_Achr9P15630_001	Banana	cytosol	26.42	15.85
TraesCS5A01G204900.1	Wheat	nucleus	25.61	15.4
Os08t0428400-01	Rice	nucleus	26.42	15.22
GSMUA_Achr7P12530_001	Banana	nucleus	25.2	15.12
TraesCS5D01G211200.2	Wheat	nucleus	25.61	15.07
TraesCS5B01G203400.2	Wheat	nucleus	25.2	14.9
TraesCS5A01G533100.1	Wheat	nucleus	18.29	14.9
HORVU5Hr1G060730.3	Barley	plastid	25.61	14.69
GSMUA_Achr5P05900_001	Banana	nucleus	23.98	14.22
TraesCSU01G139000.1	Wheat	nucleus	20.73	14.17
TraesCSU01G139100.1	Wheat	nucleus	20.33	14.16
TraesCS4B01G364700.1	Wheat	nucleus	20.33	14.12
EES15016	Sorghum	cytosol	22.76	13.08
HORVU4Hr1G087520.3	Barley	plastid	18.29	13.01
TraesCS5A01G533000.1	Wheat	nucleus	18.7	12.96
Zm00001d050365_P006	Maize	nucleus	22.36	12.56
Zm00001d005726_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	23.17	10.58

Protein Annotations

MapMan:15.5.45	InterPro:CCT_CS	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009987
GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	UniProt:K4C866	PFAM:PF06200
PFAM:PF09425	PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF14	SMART:SM00979	EnsemblPlantsGene:Solyc06g068930.1
EnsemblPlants:Solyc06g068930.1.1	InterPro:Tify_dom	UniParc:UPI0002766773	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:42758485..42759639

Molecular Weight (calculated)

27098.7 Da

IEP (calculated)

10.285

GRAVY (calculated)

-0.697

Length

246 amino acids

Sequence
(BLAST)

001: MHWSYSNKAH PQYHLSLKDQ ENIIINNNNN NKPKIGFESL ASAGLVTITT TTELFDTIHR PYTTQFGAHH VPTRNGVVGT TELRGTPRPS PGPAQLTMFY
101: AGSVCVYDNI SPEKAQAIML LAGNTPISTT IRNSPSLDHH HHHHHNNNNN NNNNSTNETT IIRSIGVLKS HELSKIVTSQ ESRQPPNHNL SAVPQARKAS
201: LARFLERRKE RVVSASPYGN GKQSSQHMMN FTINSSGSST SLPAAN

Best Arabidopsis Sequence Match ( AT3G17860.2 )
(BLAST)

001: MFDFKLIIFY SFSFVAPNRG MNWSFSNKVS ASSSQFLSFR PTQEDRHRKS GNYHLPHSGS FMPSSVADVY DSTRKAPYSS VQGVRMFPNS NQHEETNAVS
101: MSMPGFQSHH YAPGGRSFMN NNNNSQPLVG VPIMAPPISI LPPPGSIVGT TDIRSSSKPI GSPAQLTIFY AGSVCVYDDI SPEKAKAIML LAGNGSSMPQ
201: VFSPPQTHQQ VVHHTRASVD SSAMPPSFMP TISYLSPEAG SSTNGLGATK ATRGLTSTYH NNQANGSNIN CPVPVSCSTN VMAPTVALPL ARKASLARFL
301: EKRKERVTSV SPYCLDKKSS TDCRRSMSEC ISSSLSSAT

Arabidopsis Description

TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.