Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G139100.1 | Wheat | nucleus | 47.5 | 48.44 |
| TraesCS5A01G533100.1 | Wheat | nucleus | 38.61 | 46.03 |
| Os08t0428400-01 | Rice | nucleus | 38.61 | 32.55 |
| EES15016 | Sorghum | cytosol | 31.39 | 26.4 |
| CDX95570 | Canola | plastid | 10.28 | 24.67 |
| Zm00001d050365_P006 | Maize | nucleus | 28.61 | 23.52 |
| Solyc03g118540.2.1 | Tomato | cytosol | 20.56 | 22.7 |
| Solyc01g005440.2.1 | Tomato | cytosol | 18.06 | 21.04 |
| Bra016193.1-P | Field mustard | nucleus | 14.44 | 20.88 |
| Solyc06g068930.1.1 | Tomato | nucleus | 14.17 | 20.73 |
| PGSC0003DMT400074101 | Potato | nucleus | 14.17 | 20.16 |
| KRH38274 | Soybean | cytosol | 17.78 | 20.06 |
| Bra022254.1-P | Field mustard | nucleus | 18.61 | 20.0 |
| Bra007937.1-P | Field mustard | nucleus | 13.89 | 20.0 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 12.22 | 20.0 |
| PGSC0003DMT400081778 | Potato | cytosol | 18.33 | 19.53 |
| AT1G48500.1 | Thale cress | nucleus | 16.39 | 19.03 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 21.67 | 19.02 |
| AT1G70700.3 | Thale cress | cytosol | 14.44 | 18.84 |
| PGSC0003DMT400036790 | Potato | cytosol | 20.0 | 18.46 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 20.83 | 18.29 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 20.83 | 18.07 |
| Bra021281.1-P | Field mustard | nucleus | 17.22 | 17.56 |
| KRH41663 | Soybean | cytosol | 17.78 | 17.34 |
| KRH60357 | Soybean | nucleus | 17.5 | 16.98 |
| AT3G17860.1 | Thale cress | nucleus | 16.39 | 16.76 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 17.5 | 16.41 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 16.94 | 15.4 |
| KRH39044 | Soybean | nucleus | 16.39 | 15.29 |
Protein Annotations
| EnsemblPlants:TraesCSU01G139000.1 | EnsemblPlantsGene:TraesCSU01G139000 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF3 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg | SMART:SM00979 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:-:126976702..126978403
Molecular Weight (calculated)
38095.3 Da
IEP (calculated)
10.512
GRAVY (calculated)
-0.402
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMEIGSNHH HHHQGDETGD LMKPDSEYPP GLLRGGAPAT NRRQFQKAIP APVMSFRQPT ADTPMPHHQA QLRFHGRHGG SRPPFNSPGS NPSAADGVAS
101: RNQQRSTAIG AAVSRSAVGV YAPTRSIRNP KSTLMTMFYD GAVNVFDVPV DKAQEIMVLA GRASVSSPPS AVQKPDFPAP ANTSGFPVPG ARKIIIQKPG
201: ETMAPHVSVI SSPIPVVSQS PTISKSTPGY QNCTPAPTTY SGIPSLVVPP LSNAPSAQRM QQASTAVAAA IKPIAVHQSR KASLARFLEK RKDRVSSVTP
301: YSLPKSPLAS TGTLGSASTA SKLSRADIAP SGNNCHESMS MDMYNDDSLA MSRRVVIELE
101: RNQQRSTAIG AAVSRSAVGV YAPTRSIRNP KSTLMTMFYD GAVNVFDVPV DKAQEIMVLA GRASVSSPPS AVQKPDFPAP ANTSGFPVPG ARKIIIQKPG
201: ETMAPHVSVI SSPIPVVSQS PTISKSTPGY QNCTPAPTTY SGIPSLVVPP LSNAPSAQRM QQASTAVAAA IKPIAVHQSR KASLARFLEK RKDRVSSVTP
301: YSLPKSPLAS TGTLGSASTA SKLSRADIAP SGNNCHESMS MDMYNDDSLA MSRRVVIELE
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.