Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72405 | Canola | plastid | 96.67 | 93.55 |
| CDY18478 | Canola | nucleus | 99.33 | 42.21 |
| CDX92171 | Canola | nucleus | 68.67 | 30.65 |
| CDX95810 | Canola | nucleus | 66.0 | 29.55 |
| CDY23487 | Canola | cytosol, mitochondrion, nucleus | 24.0 | 16.98 |
| CDX68335 | Canola | mitochondrion, nucleus, plastid | 22.67 | 16.04 |
| CDY11556 | Canola | nucleus | 28.0 | 15.79 |
| CDY09470 | Canola | nucleus | 27.33 | 14.96 |
| CDY69855 | Canola | nucleus | 26.0 | 14.23 |
| CDX96270 | Canola | cytosol | 23.33 | 13.26 |
| TraesCS5A01G533100.1 | Wheat | nucleus | 22.67 | 11.26 |
| Os08t0428400-01 | Rice | nucleus | 31.33 | 11.01 |
| TraesCSU01G139000.1 | Wheat | nucleus | 24.67 | 10.28 |
| TraesCSU01G139100.1 | Wheat | nucleus | 23.33 | 9.92 |
| EER98873 | Sorghum | nucleus | 26.0 | 9.56 |
| EES15016 | Sorghum | cytosol | 26.67 | 9.35 |
| TraesCS5A01G204900.1 | Wheat | nucleus | 25.33 | 9.29 |
| TraesCS5D01G211200.2 | Wheat | nucleus | 25.33 | 9.09 |
| TraesCS5B01G203400.2 | Wheat | nucleus | 24.67 | 8.89 |
| TraesCS4B01G364700.1 | Wheat | nucleus | 20.67 | 8.76 |
| TraesCS5A01G533000.1 | Wheat | nucleus | 20.67 | 8.73 |
| HORVU5Hr1G060730.3 | Barley | plastid | 24.0 | 8.39 |
| HORVU4Hr1G087520.3 | Barley | plastid | 18.67 | 8.09 |
| Zm00001d032009_P001 | Maize | plastid | 0.67 | 0.75 |
Protein Annotations
| EnsemblPlants:CDX95570 | EnsemblPlantsGene:GSBRNA2T00101426001 | InterPro:CCT_CS | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF14 | PFAM:PF09425 |
| ProteinID:CDX95570 | ProteinID:CDX95570.1 | SEG:seg | UniParc:UPI0004EDF553 | MapMan:35.1 | : |
Description
BnaC01g34620D
Coordinates
chrLK031889:-:1347897..1348801
Molecular Weight (calculated)
15801.6 Da
IEP (calculated)
9.345
GRAVY (calculated)
-0.290
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLAGNGSPM PQAFLPPQTH QQVVHHARAS VDSSAMPPSF MPTVSYLSPE AGSSSNGFGA AKAARDFTTT YLSNQTNASN INSSMAASCS ANVPQTVALP
101: QARKASIARF LEKRKERVTS LSPYCLDKKS STDCRTPLSE CISSSLSSAT
101: QARKASIARF LEKRKERVTS LSPYCLDKKS STDCRTPLSE CISSSLSSAT
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.