Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020409_P002 | Maize | nucleus | 55.22 | 17.92 |
| Zm00001d005726_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 70.15 | 17.44 |
| Bra007937.1-P | Field mustard | nucleus | 20.15 | 10.8 |
| Solyc03g118540.2.1 | Tomato | cytosol | 26.12 | 10.74 |
| PGSC0003DMT400074101 | Potato | nucleus | 20.15 | 10.67 |
| Zm00001d050365_P006 | Maize | nucleus | 33.58 | 10.27 |
| PGSC0003DMT400036790 | Potato | cytosol | 29.85 | 10.26 |
| Solyc06g068930.1.1 | Tomato | nucleus | 17.91 | 9.76 |
| AT1G48500.1 | Thale cress | nucleus | 21.64 | 9.35 |
| Bra021281.1-P | Field mustard | nucleus | 23.88 | 9.07 |
| Bra022254.1-P | Field mustard | nucleus | 22.39 | 8.96 |
| AT3G17860.1 | Thale cress | nucleus | 22.39 | 8.52 |
| Bra016193.1-P | Field mustard | nucleus | 15.67 | 8.43 |
| Solyc01g005440.2.1 | Tomato | cytosol | 19.4 | 8.41 |
| PGSC0003DMT400081778 | Potato | cytosol | 20.9 | 8.28 |
| KRH41663 | Soybean | cytosol | 22.39 | 8.13 |
| AT1G70700.3 | Thale cress | cytosol | 16.42 | 7.97 |
| KRH38274 | Soybean | cytosol | 18.66 | 7.84 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 22.39 | 7.58 |
| KRH60357 | Soybean | nucleus | 20.9 | 7.55 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 20.9 | 7.29 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 21.64 | 7.07 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 11.19 | 6.82 |
| KRH39044 | Soybean | nucleus | 19.4 | 6.74 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 19.4 | 6.34 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 19.4 | 6.27 |
| CDX95570 | Canola | plastid | 0.75 | 0.67 |
Protein Annotations
| EnsemblPlants:Zm00001d032009_P001 | EnsemblPlants:Zm00001d032009_T001 | EnsemblPlantsGene:Zm00001d032009 | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF3 | PFAM:PF06200 | PFscan:PS51320 | ProteinID:ONM04199.1 | UniParc:UPI000842BC32 | UniProt:A0A1D6KMZ2 |
| MapMan:35.1 | : | : | : | : | : |
Description
Protein TIFY 6B
Coordinates
chr1:-:209332649..209333324
Molecular Weight (calculated)
14451.8 Da
IEP (calculated)
11.404
GRAVY (calculated)
-0.443
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFRSAAREE PSFPQFSAFD GTKNTAPRML THQRSFGPDS TQYAALHRAQ NGARVVPVSS PFSQSNPMFR VQSSPSLPNS TAFKQPPFAI SNAVASSTVG
101: SYGGTRDAVR PRTAQLTIFY SGSVNVFNNV SAEK
101: SYGGTRDAVR PRTAQLTIFY SGSVNVFNNV SAEK
001: MSLFPCEASN MDSMVQDVKP TNLFPRQPSF SSSSSSLPKE DVLKMTQTTR SVKPESQTAP LTIFYAGQVI VFNDFSAEKA KEVINLASKG TANSLAKNQT
101: DIRSNIATIA NQVPHPRKTT TQEPIQSSPT PLTELPIARR ASLHRFLEKR KDRVTSKAPY QLCDPAKASS NPQTTGNMSW LGLAAEI
101: DIRSNIATIA NQVPHPRKTT TQEPIQSSPT PLTELPIARR ASLHRFLEKR KDRVTSKAPY QLCDPAKASS NPQTTGNMSW LGLAAEI
Arabidopsis Description
TIFY10ATIFY10A [Source:UniProtKB/TrEMBL;Acc:A0A178W7G1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.