Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d022139_P001 | Maize | plastid | 64.29 | 73.39 |
| TraesCS2B01G195600.1 | Wheat | plastid | 45.49 | 52.38 |
| HORVU2Hr1G031310.9 | Barley | cytosol, mitochondrion, plastid | 46.99 | 52.3 |
| Os07t0615200-01 | Rice | mitochondrion | 47.37 | 51.64 |
| TraesCS2D01G176800.1 | Wheat | plastid | 44.36 | 51.08 |
| TraesCS2A01G169300.1 | Wheat | plastid | 42.86 | 49.35 |
| Zm00001d029448_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 38.72 | 45.18 |
| GSMUA_Achr2P21770_001 | Banana | mitochondrion | 31.95 | 38.46 |
| GSMUA_Achr3P02140_001 | Banana | mitochondrion | 28.57 | 36.36 |
| GSMUA_Achr8P16780_001 | Banana | cytosol | 32.71 | 34.39 |
| GSMUA_Achr11P... | Banana | cytosol | 29.7 | 34.05 |
| Solyc07g042170.2.1 | Tomato | cytosol | 27.07 | 33.33 |
| Zm00001d020614_P001 | Maize | cytosol, plastid | 26.32 | 32.11 |
| CDX73127 | Canola | cytosol | 28.95 | 31.43 |
| Bra015880.1-P | Field mustard | cytosol | 28.95 | 31.43 |
| CDY45408 | Canola | cytosol | 28.95 | 31.43 |
| CDY37269 | Canola | nucleus | 28.2 | 31.25 |
| CDY46022 | Canola | nucleus | 28.2 | 31.25 |
| PGSC0003DMT400075155 | Potato | nucleus | 25.19 | 31.16 |
| CDX68156 | Canola | cytosol | 21.05 | 30.94 |
| Bra008172.1-P | Field mustard | nucleus | 27.82 | 30.83 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 30.83 | 30.6 |
| Zm00001d005813_P002 | Maize | cytosol, plastid | 25.94 | 30.4 |
| CDY26697 | Canola | plastid | 27.82 | 29.25 |
| AT1G74950.1 | Thale cress | cytosol | 27.07 | 28.92 |
| CDX96675 | Canola | plastid | 28.57 | 28.9 |
| Bra025713.1-P | Field mustard | plastid | 27.44 | 28.74 |
| CDX85865 | Canola | cytosol | 24.06 | 28.57 |
| Solyc12g009220.1.1 | Tomato | nucleus | 27.07 | 28.57 |
| CDY41023 | Canola | plastid | 27.07 | 28.35 |
| PGSC0003DMT400007592 | Potato | nucleus | 27.07 | 28.35 |
| Bra016520.1-P | Field mustard | plastid | 27.44 | 28.19 |
| AT1G19180.1 | Thale cress | cytosol | 26.32 | 27.67 |
| CDX83781 | Canola | plastid | 27.44 | 27.65 |
| Bra003778.1-P | Field mustard | cytosol | 22.93 | 27.48 |
| GSMUA_Achr1P21870_001 | Banana | mitochondrion | 36.09 | 27.2 |
| Bra031065.1-P | Field mustard | plastid | 27.82 | 27.11 |
| Zm00001d044708_P001 | Maize | cytosol, extracellular, plastid | 14.66 | 26.0 |
| CDX73289 | Canola | cytosol | 18.05 | 25.53 |
| Zm00001d033972_P002 | Maize | cytosol, extracellular, plastid | 15.41 | 23.7 |
| Zm00001d002029_P003 | Maize | nucleus | 17.29 | 21.3 |
| Zm00001d026477_P002 | Maize | nucleus | 17.29 | 20.0 |
| Zm00001d021924_P001 | Maize | plastid | 9.77 | 18.98 |
| Zm00001d046270_P001 | Maize | plastid | 9.77 | 18.98 |
| Zm00001d013855_P002 | Maize | plastid | 13.16 | 15.28 |
| CDX81917 | Canola | plastid | 28.2 | 14.76 |
| CDY21679 | Canola | plastid | 28.57 | 13.95 |
Protein Annotations
| EnsemblPlants:Zm00001d006860_P001 | EnsemblPlants:Zm00001d006860_T001 | EnsemblPlantsGene:Zm00001d006860 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF19 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | ProteinID:ONM25271.1 |
| SMART:SM00979 | UniParc:UPI000843DBDE | UniProt:A0A1D6F1D1 | MapMan:11.7.2.1.2 | MapMan:15.5.45 | : |
Description
ZIM-transcription factor 12Protein TIFY 10B
Coordinates
chr2:+:218018545..218021082
Molecular Weight (calculated)
28364.0 Da
IEP (calculated)
10.163
GRAVY (calculated)
-0.380
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASARPGER ATSFAVACSL LSRFVRQNGA APAQLGLGIK GEVEQQRTPA TINLLPGADG EETERRKETM ELFPQSAGFG VKDAAAAPSS TVVAQLEPSC
101: LRSHGQKAKR FEFGNIVIEQ ENKEKPKQLT IFYGGKVLVF DDFPADKAKD LMQLASKGGP VVQNVVLPQP SAPAAAVTDK AVPVPVISLP AAQADAKKPT
201: RTNASDMPIM RKASLHRFLE KRKDRLNANA PYQTSPSDAA PVKKEPESQA WLGLGPNAVK SNLNLS
101: LRSHGQKAKR FEFGNIVIEQ ENKEKPKQLT IFYGGKVLVF DDFPADKAKD LMQLASKGGP VVQNVVLPQP SAPAAAVTDK AVPVPVISLP AAQADAKKPT
201: RTNASDMPIM RKASLHRFLE KRKDRLNANA PYQTSPSDAA PVKKEPESQA WLGLGPNAVK SNLNLS
001: MSSFSAECWD FSGRKPSFSQ TCTRLSRYLK EKGSFGDLSL GMTCKPDVNG GSRQPTMMNL FPCEASGMDS SAGQEDIKPK TMFPRQSSFS SSSSSGTKED
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
Arabidopsis Description
TIFY10BTIFY10B [Source:UniProtKB/TrEMBL;Acc:A0A178WA69]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.