Factsheet for Zm00001d007536_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005813_P002
Zm00001d006860_P001
Zm00001d020614_P001
Zm00001d022139_P001
Zm00001d029448_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01260.1	Zm00001d005813_P002	AT1G19180.1	21798944
AT1G01260.1	Zm00001d006860_P001	AT1G19180.1	21798944
AT1G01260.1	Zm00001d020614_P001	AT1G19180.1	21798944
AT1G01260.1	Zm00001d022139_P001	AT1G19180.1	21798944
AT1G01260.1	Zm00001d029448_P001	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009013_P001	Maize	nucleus	69.69	69.23
Zm00001d039271_P001	Maize	nucleus	63.76	62.82
GSMUA_Achr10P...	Banana	nucleus	28.34	37.47
GSMUA_Achr7P14640_001	Banana	nucleus	28.01	35.12
VIT_15s0046g00320.t01	Wine grape	nucleus	32.62	32.78
PGSC0003DMT400000652	Potato	nucleus	32.13	32.61
GSMUA_Achr8P05350_001	Banana	nucleus	24.22	32.59
KRH47899	Soybean	nucleus	33.44	32.43
KRH68922	Soybean	nucleus	29.32	32.36
KRH06456	Soybean	nucleus	32.62	32.04
Solyc01g096050.2.1	Tomato	nucleus	31.63	31.74
PGSC0003DMT400018046	Potato	extracellular, nucleus	30.15	31.66
GSMUA_Achr1P28110_001	Banana	nucleus	25.86	31.59
GSMUA_Achr8P26280_001	Banana	cytosol	24.05	31.53
CDY27319	Canola	nucleus	22.9	31.38
Solyc05g050560.1.1	Tomato	nucleus	29.65	31.09
GSMUA_Achr6P35730_001	Banana	nucleus	25.04	30.96
Zm00001d043706_P001	Maize	nucleus	23.72	30.84
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	23.72	30.32
CDY66312	Canola	nucleus	22.24	29.48
Bra004532.1-P	Field mustard	nucleus	23.39	29.22
Bra039279.1-P	Field mustard	nucleus	22.08	29.19
CDX80023	Canola	nucleus	23.39	29.16
KRG97199	Soybean	nucleus	29.49	28.92
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	27.35	28.87
Bra033273.1-P	Field mustard	nucleus	27.51	28.6
CDX90021	Canola	nucleus	25.37	28.52
CDY56874	Canola	nucleus	23.06	28.51
AT1G01260.1	Thale cress	nucleus	27.18	27.97
AT2G46510.1	Thale cress	nucleus	24.38	26.15
Zm00001d031717_P001	Maize	nucleus	7.74	18.5
Zm00001d047017_P001	Maize	nucleus	20.59	17.78
Zm00001d030028_P001	Maize	nucleus	20.43	17.59
Zm00001d052728_P001	Maize	nucleus	7.74	17.09
Zm00001d006150_P001	Maize	nucleus	8.07	16.84
Zm00001d021164_P001	Maize	nucleus	7.91	16.55
Zm00001d026009_P001	Maize	plastid	4.61	13.73
Zm00001d038966_P001	Maize	plastid	4.61	13.73
Zm00001d028314_P001	Maize	nucleus	3.79	12.3
Zm00001d000236_P001	Maize	nucleus, plastid	10.05	10.95
Zm00001d026147_P002	Maize	nucleus	10.71	10.55
Zm00001d003604_P001	Maize	nucleus	5.77	10.42
Zm00001d033413_P001	Maize	nucleus	5.27	10.06
Zm00001d025462_P001	Maize	nucleus	5.44	10.0
Zm00001d019170_P001	Maize	nucleus	10.87	9.79
Zm00001d033412_P001	Maize	nucleus	5.77	9.49
Zm00001d028312_P001	Maize	nucleus	4.94	9.38
Zm00001d013370_P001	Maize	plastid	5.6	9.12
Zm00001d030232_P001	Maize	nucleus	4.78	9.06
Zm00001d033848_P004	Maize	nucleus	5.27	8.79
Zm00001d033407_P001	Maize	nucleus	5.11	8.71
Zm00001d031167_P002	Maize	nucleus	5.44	8.4
Zm00001d024781_P001	Maize	nucleus	4.28	7.37
Zm00001d028315_P001	Maize	cytosol	1.32	5.93

Protein Annotations

EnsemblPlants:Zm00001d007536_P001	EnsemblPlants:Zm00001d007536_T001	EnsemblPlantsGene:Zm00001d007536	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:IPR011598	InterPro:MYC/MYB_N	InterPro:bHLH_dom	PANTHER:PTHR11514	PANTHER:PTHR11514:SF47
PFAM:PF14215	ProteinID:ONM27069.1	SEG:seg	UniParc:UPI000844791A	UniProt:A0A1D6F753	MapMan:35.1

Description

bHLH-transcription factor 59Transcription factor bHLH3

Coordinates

chr2:+:234252951..234257011

Molecular Weight (calculated)

66562.4 Da

IEP (calculated)

9.193

GRAVY (calculated)

-0.462

Length

607 amino acids

Sequence
(BLAST)

001: MPLHLAAMQG RPAYMQAPVS CPECDCDCSL CCWVRLIRPE ADGPLPRDFS SVPFRLVGIM VMKMEHEDNG AIGGTDGTWT EDDRALGAAV LGADAFAYLT
101: KGGGAISEGL VATSLPGDLQ NKLQELVESE SPGTSWNYAI FWQLSRTKSG DLVLGWGDGW CGEPRDGELG AAASAGSDDS KQRMRKRVLQ RLHIAFGVAD
201: EEDYSPGIDQ VTDTEMFFLA SMYFAFPRHA GGPGQAFAAG IPSGFPIRHE AERSPGLAKI FGKDLNLGRP SVGLAVGLSN SKVDERTWEQ RSAVGGTSLL
301: PSVQKGLQNF SWSQARGLNS HQQKFGNGVL IVSNNEGAHR NNGAVDSPSA AQFQLRKAPQ LQKLSVVQKT PQLVNQQPMQ AHVPRQIDFS AGSSSKPGVL
401: VTRAGVLDGE SAEVDGLCKE EGPPPVMEDR WPRKRGRKPA NGREEPLNHV EAEHQRREKL NQRFYALRAV RRFCSTLGMT NQAVNAAKEA VQRSEDLDIR
501: IIRLYEVKPK RVQFQKADSV ILKNHADIQM QKVKTWKSSA NLKKKSLRIT EIRLLKEAYG NHWLLRNPIR VEVKTEAKST SKVAGQQELG PSITPLGLRL
601: ELFPTKS

Best Arabidopsis Sequence Match ( AT1G01260.3 )
(BLAST)

001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR

Arabidopsis Description

BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.