Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93685 | Sorghum | mitochondrion | 80.5 | 68.82 |
| Zm00001d026009_P001 | Maize | plastid | 36.16 | 56.37 |
| Zm00001d038966_P001 | Maize | plastid | 36.16 | 56.37 |
| Zm00001d033412_P001 | Maize | nucleus | 60.38 | 52.03 |
| Zm00001d003604_P001 | Maize | nucleus | 52.83 | 50.0 |
| TraesCS4D01G306400.1 | Wheat | nucleus | 24.53 | 47.27 |
| HORVU3Hr1G002620.1 | Barley | plastid | 33.96 | 46.96 |
| Zm00001d025462_P001 | Maize | nucleus | 47.17 | 45.45 |
| TraesCS4D01G018700.1 | Wheat | nucleus | 49.06 | 43.21 |
| TraesCS4B01G021500.1 | Wheat | nucleus | 48.43 | 43.14 |
| HORVU4Hr1G003210.1 | Barley | nucleus | 49.06 | 42.74 |
| Zm00001d033407_P001 | Maize | nucleus | 47.8 | 42.7 |
| TraesCS4D01G019200.1 | Wheat | nucleus | 48.11 | 42.5 |
| TraesCS4B01G021100.1 | Wheat | nucleus | 47.8 | 41.87 |
| TraesCS4B01G020900.1 | Wheat | nucleus | 48.43 | 41.62 |
| TraesCS4A01G292800.1 | Wheat | nucleus | 48.11 | 41.58 |
| TraesCS4B01G021200.1 | Wheat | nucleus | 47.48 | 40.92 |
| TraesCS3D01G014900.1 | Wheat | nucleus | 42.45 | 40.18 |
| TraesCS4A01G408700.1 | Wheat | nucleus | 33.96 | 40.0 |
| TraesCS3B01G029800.1 | Wheat | nucleus | 41.2 | 39.94 |
| TraesCS3A01G019100.1 | Wheat | nucleus | 39.62 | 39.62 |
| TraesCS4D01G306300.1 | Wheat | nucleus | 41.82 | 39.0 |
| TraesCS4B01G308200.1 | Wheat | nucleus | 44.03 | 38.89 |
| Zm00001d024781_P001 | Maize | nucleus | 43.08 | 38.81 |
| TraesCS3A01G019000.1 | Wheat | nucleus | 38.68 | 38.56 |
| TraesCS4B01G308100.1 | Wheat | nucleus | 41.82 | 38.33 |
| TraesCS4B01G308300.1 | Wheat | nucleus | 43.4 | 37.91 |
| HORVU4Hr1G078880.2 | Barley | nucleus | 42.77 | 37.26 |
| TraesCS4A01G408800.1 | Wheat | nucleus | 44.34 | 36.72 |
| HORVU4Hr1G078910.2 | Barley | nucleus | 42.45 | 36.39 |
| Zm00001d031167_P002 | Maize | nucleus | 38.68 | 31.3 |
| Zm00001d028315_P001 | Maize | cytosol | 12.58 | 29.63 |
| Zm00001d033848_P004 | Maize | nucleus | 32.08 | 28.02 |
| Zm00001d013370_P001 | Maize | plastid | 32.39 | 27.61 |
| Zm00001d028312_P001 | Maize | nucleus | 22.96 | 22.81 |
| Zm00001d030232_P001 | Maize | nucleus | 20.44 | 20.31 |
| Zm00001d031717_P001 | Maize | nucleus | 14.78 | 18.5 |
| Zm00001d028314_P001 | Maize | nucleus | 9.75 | 16.58 |
| Zm00001d052728_P001 | Maize | nucleus | 13.84 | 16.0 |
| Zm00001d006150_P001 | Maize | nucleus | 14.47 | 15.81 |
| Zm00001d021164_P001 | Maize | nucleus | 13.84 | 15.17 |
| Zm00001d043706_P001 | Maize | nucleus | 16.67 | 11.35 |
| Zm00001d000236_P001 | Maize | nucleus, plastid | 16.98 | 9.69 |
| Zm00001d026147_P002 | Maize | nucleus | 18.24 | 9.42 |
| Zm00001d009013_P001 | Maize | nucleus | 17.61 | 9.17 |
| Zm00001d039271_P001 | Maize | nucleus | 17.61 | 9.09 |
| Zm00001d030028_P001 | Maize | nucleus | 19.18 | 8.65 |
| Zm00001d047017_P001 | Maize | nucleus | 18.87 | 8.53 |
| Zm00001d019170_P001 | Maize | nucleus | 14.15 | 6.68 |
| Zm00001d007536_P001 | Maize | plastid | 10.06 | 5.27 |
Protein Annotations
| EntrezGene:103645498 | MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | UniProt:A0A1D6KYW1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | ProteinID:ONM07571.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004DEB938 | EnsemblPlantsGene:Zm00001d033413 | EnsemblPlants:Zm00001d033413_P001 | EnsemblPlants:Zm00001d033413_T001 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
bHLH-transcription factor 28Transcription factor bHLH28
Coordinates
chr1:-:262398584..262399667
Molecular Weight (calculated)
34198.0 Da
IEP (calculated)
7.690
GRAVY (calculated)
-0.257
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDSSLFMQW AMDTLQHENN PAPASAAAVH GGFSEATFPS LKALREASHA AEMVQELIAD ADVVRHAPNS WNSGDNTTAN YNVPAGWGFG GATAASALPG
101: SHGMMEAPPA MATRGRPPPG LVYRLPPTRR AGLKSLGSMA AAYAKDHIIA ERKRREKINQ RFIELSTVIP GLKKMDKATI LLDATRYLKE LQEKLKDLEQ
201: RKEAGGGSIE TLVLVKKPCL HAAAARDDDG GSSLPASPPA GTPTEGKRLP EIEVQFSELE KTVAVRVHCE NRKGVVVHVL AELEDLHLSN IHANVMPFTA
301: CTRIITITAK ASFPCPAF
101: SHGMMEAPPA MATRGRPPPG LVYRLPPTRR AGLKSLGSMA AAYAKDHIIA ERKRREKINQ RFIELSTVIP GLKKMDKATI LLDATRYLKE LQEKLKDLEQ
201: RKEAGGGSIE TLVLVKKPCL HAAAARDDDG GSSLPASPPA GTPTEGKRLP EIEVQFSELE KTVAVRVHCE NRKGVVVHVL AELEDLHLSN IHANVMPFTA
301: CTRIITITAK ASFPCPAF
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.