Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G306400.1 | Wheat | nucleus | 52.96 | 86.67 |
| TraesCS4B01G308200.1 | Wheat | nucleus | 87.04 | 65.28 |
| TraesCS4B01G308300.1 | Wheat | nucleus | 87.41 | 64.84 |
| TraesCS4A01G408800.1 | Wheat | nucleus | 87.04 | 61.2 |
| HORVU4Hr1G078910.2 | Barley | nucleus | 80.74 | 58.76 |
| TraesCS3A01G019100.1 | Wheat | nucleus | 62.96 | 53.46 |
| TraesCS3A01G019000.1 | Wheat | nucleus | 62.59 | 52.98 |
| Zm00001d038966_P001 | Maize | plastid | 30.37 | 40.2 |
| Zm00001d026009_P001 | Maize | plastid | 30.37 | 40.2 |
| Zm00001d003604_P001 | Maize | nucleus | 47.78 | 38.39 |
| EES10849 | Sorghum | nucleus | 47.41 | 37.1 |
| TraesCS4A01G292800.1 | Wheat | nucleus | 48.89 | 35.87 |
| KXG37866 | Sorghum | nucleus | 48.15 | 35.04 |
| Zm00001d033412_P001 | Maize | nucleus | 46.67 | 34.15 |
| Zm00001d033413_P001 | Maize | nucleus | 40.0 | 33.96 |
| Zm00001d025462_P001 | Maize | nucleus | 40.0 | 32.73 |
| TraesCS4A01G292700.1 | Wheat | nucleus | 42.96 | 32.31 |
| TraesCS4A01G354100.1 | Wheat | nucleus | 37.78 | 31.38 |
| Zm00001d024781_P001 | Maize | nucleus | 40.0 | 30.59 |
| OQU75589 | Sorghum | nucleus | 42.59 | 29.87 |
| EER93685 | Sorghum | mitochondrion | 41.11 | 29.84 |
| OQU77369 | Sorghum | nucleus | 43.7 | 28.1 |
| TraesCS5A01G014800.1 | Wheat | nucleus | 40.0 | 27.48 |
| TraesCS7A01G558700.1 | Wheat | nucleus | 32.59 | 27.41 |
| TraesCS5A01G505100.1 | Wheat | nucleus | 22.59 | 20.4 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 28.15 | 20.16 |
| TraesCS5A01G555200.1 | Wheat | nucleus | 21.48 | 18.65 |
| TraesCS4A01G059100.1 | Wheat | nucleus | 21.85 | 17.77 |
| TraesCS5A01G555300.1 | Wheat | nucleus | 15.56 | 17.14 |
| TraesCS1A01G369200.1 | Wheat | nucleus | 11.48 | 15.66 |
| TraesCS5A01G306600.1 | Wheat | nucleus | 14.81 | 14.55 |
| TraesCS2A01G448500.1 | Wheat | nucleus | 13.7 | 14.45 |
| TraesCS5A01G306400.1 | Wheat | nucleus | 11.85 | 14.35 |
| TraesCS5A01G306200.1 | Wheat | nucleus | 14.81 | 14.34 |
| TraesCS5A01G306700.1 | Wheat | peroxisome | 14.44 | 14.23 |
| TraesCS5A01G306500.1 | Wheat | nucleus | 14.44 | 13.88 |
| TraesCS3A01G252900.1 | Wheat | nucleus | 14.81 | 8.71 |
| TraesCS5A01G489500.1 | Wheat | nucleus | 14.81 | 7.02 |
| TraesCS2A01G409600.2 | Wheat | nucleus, plastid | 14.44 | 6.99 |
| TraesCS5A01G558500.1 | Wheat | nucleus | 14.81 | 6.84 |
| TraesCS4A01G028900.1 | Wheat | nucleus | 14.81 | 6.7 |
| TraesCS2A01G409400.1 | Wheat | nucleus | 14.07 | 6.69 |
| TraesCS3A01G158600.1 | Wheat | nucleus | 15.19 | 6.66 |
| TraesCS1A01G102400.2 | Wheat | nucleus, vacuole | 15.19 | 6.55 |
| TraesCS1A01G193200.1 | Wheat | nucleus | 15.93 | 6.2 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G408700.1 | EnsemblPlantsGene:TraesCS4A01G408700 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR23042 |
| PANTHER:PTHR23042:SF74 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.7 | : | : | : |
Description
No Description!
Coordinates
chr4A:+:681592914..681594333
Molecular Weight (calculated)
28266.3 Da
IEP (calculated)
5.118
GRAVY (calculated)
-0.233
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MQWAVSTLEQ QDPGGADGGS EKSAGFPCLQ ALRDSSELTE AQNILSSGDD TSGGGGIITP APDSAVHQGS WSMSSPTSGG PFAPPGISST GTGTSNALSM
101: SWNFGAVLPP QPVSSGGGGT LAAGAPLRSC VSQPTRRAST KSTPYAQDHI MAERKRRENI NQSFIELSAL IPGLKKMDKG TILADATIFV KELQERVKYL
201: EAAGGNHRSV ETVVLVRKLC RPVAPDVGES SARVLAEVEE LHLRIVHNDV MPFTASTVII TTMAEASYDE
101: SWNFGAVLPP QPVSSGGGGT LAAGAPLRSC VSQPTRRAST KSTPYAQDHI MAERKRRENI NQSFIELSAL IPGLKKMDKG TILADATIFV KELQERVKYL
201: EAAGGNHRSV ETVVLVRKLC RPVAPDVGES SARVLAEVEE LHLRIVHNDV MPFTASTVII TTMAEASYDE
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.