Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU77369 | Sorghum | nucleus | 95.58 | 87.62 |
| Zm00001d024781_P001 | Maize | nucleus | 71.69 | 78.19 |
| TraesCS4D01G306400.1 | Wheat | nucleus | 20.78 | 48.48 |
| KXG37866 | Sorghum | nucleus | 41.56 | 43.13 |
| EES10849 | Sorghum | nucleus | 38.44 | 42.9 |
| HORVU3Hr1G002620.1 | Barley | plastid | 25.45 | 42.61 |
| TraesCS4A01G408700.1 | Wheat | nucleus | 29.87 | 42.59 |
| TraesCS4D01G019200.1 | Wheat | nucleus | 38.96 | 41.67 |
| TraesCS4B01G021500.1 | Wheat | nucleus | 38.44 | 41.46 |
| TraesCS4D01G018700.1 | Wheat | nucleus | 38.44 | 41.0 |
| HORVU4Hr1G003210.1 | Barley | nucleus | 38.7 | 40.82 |
| TraesCS4B01G020900.1 | Wheat | nucleus | 38.96 | 40.54 |
| TraesCS4B01G021100.1 | Wheat | nucleus | 38.18 | 40.5 |
| TraesCS4A01G292800.1 | Wheat | nucleus | 38.44 | 40.22 |
| EER93685 | Sorghum | mitochondrion | 37.92 | 39.25 |
| TraesCS4B01G308200.1 | Wheat | nucleus | 36.62 | 39.17 |
| TraesCS4B01G021200.1 | Wheat | nucleus | 37.14 | 38.75 |
| TraesCS4D01G306300.1 | Wheat | nucleus | 33.77 | 38.12 |
| TraesCS4B01G308300.1 | Wheat | nucleus | 35.84 | 37.91 |
| TraesCS3D01G014900.1 | Wheat | nucleus | 32.99 | 37.8 |
| TraesCS3A01G019100.1 | Wheat | nucleus | 31.17 | 37.74 |
| TraesCS3A01G019000.1 | Wheat | nucleus | 31.17 | 37.62 |
| TraesCS3B01G029800.1 | Wheat | nucleus | 31.95 | 37.5 |
| TraesCS4B01G308100.1 | Wheat | nucleus | 33.77 | 37.46 |
| HORVU4Hr1G078880.2 | Barley | nucleus | 35.06 | 36.99 |
| HORVU4Hr1G078910.2 | Barley | nucleus | 34.81 | 36.12 |
| TraesCS4A01G408800.1 | Wheat | nucleus | 35.84 | 35.94 |
| EER93684 | Sorghum | nucleus | 35.58 | 35.58 |
| KXG24110 | Sorghum | nucleus | 32.21 | 31.16 |
| KXG37671 | Sorghum | nucleus | 27.01 | 29.21 |
| KXG39824 | Sorghum | nucleus | 15.84 | 18.71 |
| OQU92034 | Sorghum | nucleus | 14.55 | 17.67 |
| KXG25462 | Sorghum | nucleus | 12.47 | 17.27 |
| OQU80777 | Sorghum | nucleus | 12.47 | 17.14 |
| EER97058 | Sorghum | cytosol, nucleus, plastid | 11.69 | 16.3 |
| EER99201 | Sorghum | nucleus | 12.47 | 16.22 |
| OQU92032 | Sorghum | nucleus | 14.03 | 15.88 |
| OQU80778 | Sorghum | nucleus | 10.91 | 15.56 |
| OQU86344 | Sorghum | nucleus | 10.13 | 15.23 |
| OQU80776 | Sorghum | nucleus | 10.39 | 15.21 |
| OQU75588 | Sorghum | nucleus | 10.39 | 15.21 |
| OQU80775 | Sorghum | cytosol, nucleus, peroxisome, plastid | 10.91 | 15.05 |
| EES01345 | Sorghum | nucleus | 12.73 | 10.12 |
| EES19274 | Sorghum | nucleus | 13.25 | 8.69 |
| OQU82120 | Sorghum | nucleus | 13.25 | 8.67 |
| OQU82117 | Sorghum | nucleus | 12.99 | 8.47 |
| KXG39194 | Sorghum | nucleus | 15.06 | 8.2 |
| OQU81560 | Sorghum | nucleus | 12.47 | 8.15 |
| OQU82119 | Sorghum | nucleus | 11.17 | 7.88 |
| EER99993 | Sorghum | nucleus | 12.47 | 7.72 |
| OQU88697 | Sorghum | nucleus | 12.73 | 7.24 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | UniProt:A0A1W0VQN2 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| EnsemblPlants:OQU75589 | ProteinID:OQU75589 | ProteinID:OQU75589.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR23042 |
| PANTHER:PTHR23042:SF74 | SMART:SM00353 | EnsemblPlantsGene:SORBI_3K024500 | SUPFAM:SSF47459 | UniParc:UPI0009DC8429 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chrsuper_2250:+:1656..2909
Molecular Weight (calculated)
39736.4 Da
IEP (calculated)
4.838
GRAVY (calculated)
-0.219
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTLLQEEEP AVDDVHWAMD TLLQEEEEEH AAVDGGDAVV FPSLQALRDA SHAAEMVREL MAVAAAAETH DAAAANSSPS GGSGDGGGEV TDGGSSGATG
101: TDPAAPATTA ATDYYGGSWP PQSPTSSSFA RAPPPAPPSS NSNTILPTVS WNFVTGSAQP GSEGVLEEAA VPARSLPPPE LAQRRRSPPP PRRAAHHPVR
201: SMGAPSSASC TPDHIVAERK RREKINKRLI ELSTVIPGLK KMDKATILSD AAKYVKELQQ RLKALEDAAA ADAGSIRRKA PPAADENGGS GSPTSASSSS
301: GAPALPEIEA RLSERSVMVR IHSCGGKGVA AAALAVVEGL GLTVVHANVM PFSACTISIT ITAEASPFSS YYSFLPIFIL FGYLD
101: TDPAAPATTA ATDYYGGSWP PQSPTSSSFA RAPPPAPPSS NSNTILPTVS WNFVTGSAQP GSEGVLEEAA VPARSLPPPE LAQRRRSPPP PRRAAHHPVR
201: SMGAPSSASC TPDHIVAERK RREKINKRLI ELSTVIPGLK KMDKATILSD AAKYVKELQQ RLKALEDAAA ADAGSIRRKA PPAADENGGS GSPTSASSSS
301: GAPALPEIEA RLSERSVMVR IHSCGGKGVA AAALAVVEGL GLTVVHANVM PFSACTISIT ITAEASPFSS YYSFLPIFIL FGYLD
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.