Factsheet for HORVU4Hr1G078880.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G308100.1	Wheat	nucleus	77.53	81.56
TraesCS4D01G306300.1	Wheat	nucleus	76.16	81.52
TraesCS4A01G408800.1	Wheat	nucleus	81.1	77.08
HORVU4Hr1G078910.2	Barley	nucleus	66.85	65.77
HORVU3Hr1G002620.1	Barley	plastid	41.37	65.65
Zm00001d038966_P001	Maize	plastid	28.49	50.98
Zm00001d026009_P001	Maize	plastid	28.49	50.98
EES10849	Sorghum	nucleus	46.03	48.7
Zm00001d003604_P001	Maize	nucleus	42.47	46.13
HORVU4Hr1G003210.1	Barley	nucleus	44.93	44.93
Zm00001d025462_P001	Maize	nucleus	40.27	44.55
KXG37866	Sorghum	nucleus	44.93	44.2
EER93685	Sorghum	mitochondrion	44.11	43.28
Zm00001d033413_P001	Maize	nucleus	37.26	42.77
Zm00001d033412_P001	Maize	nucleus	42.19	41.73
HORVU0Hr1G014300.1	Barley	nucleus	35.62	39.39
Zm00001d024781_P001	Maize	nucleus	36.99	38.24
HORVU5Hr1G002090.11	Barley	nucleus	40.0	38.22
OQU77369	Sorghum	nucleus	41.64	36.19
OQU75589	Sorghum	nucleus	36.99	35.06
HORVU4Hr1G003340.3	Barley	nucleus	41.64	32.83
HORVU4Hr1G009440.2	Barley	nucleus	27.4	29.33
HORVU7Hr1G120420.2	Barley	nucleus	28.49	26.94
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	9.32	20.73
HORVU5Hr1G080080.1	Barley	nucleus, plastid	11.23	19.52
HORVU5Hr1G080040.1	Barley	nucleus	13.7	18.66
HORVU5Hr1G079900.1	Barley	cytosol	11.78	15.93
HORVU4Hr1G065640.6	Barley	nucleus	12.33	13.2
HORVU3Hr1G066390.1	Barley	nucleus	12.88	10.11
HORVU1Hr1G020370.2	Barley	extracellular, nucleus	12.88	9.23
HORVU2Hr1G096810.5	Barley	nucleus	13.97	9.09
HORVU1Hr1G050560.1	Barley	nucleus	16.99	9.06
HORVU3Hr1G057280.2	Barley	nucleus	14.79	7.04

Protein Annotations

EnsemblPlants:HORVU4Hr1G078880.2	EnsemblPlantsGene:HORVU4Hr1G078880	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR23042	PANTHER:PTHR23042:SF74	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002963761	UniProt:M0YB69	MapMan:15.5.32	MapMan:25.4.1.7	:

Description

No Description!

Coordinates

chrchr4H:+:609460946..609465792

Molecular Weight (calculated)

39202.6 Da

IEP (calculated)

6.319

GRAVY (calculated)

-0.334

Length

365 amino acids

Sequence
(BLAST)

001: MLHELGQWRR TDLMGDMDDS LMFMQWAVST LQHQDEVGTD GGGERSACFP CLQALRDSSE LVEAQNSTMT SSDDTGGGGG IISPATDAAV HQGSWSPASP
101: TSGGPFAPSG VSSTGITNTL SMSWNFGGVL PLPPPPVRSG GGGNLAAGAP LRSRVAQPTR GASTKGTPHA QDHIMAERKR REKINQRFIE LSAVIPGLKK
201: MDKGTILTDA TRYVKELQER VRSLEAAGGN HKSVETAVLV RKPCRPVAPD DGEGSARFLL AAGTPEIRSQ LPEIEAKLSE DNVMVRIHCE MNGKGLFARV
301: LAEVEELHLR IVQNSVMPFT SSTVIITTMA KVEKGFTINT EEIVERLNYA LYQLSLSNSS GNNNY

Best Arabidopsis Sequence Match ( AT2G22770.1 )
(BLAST)

001: MDDSSFMDLM IDTDEYLIDD WESDFPICGE TNTNPGSESG SGTGFELLAE RPTKQMKTNN NMNSTSSSPS SSSSSGSRTS QVISFGSPDT KTNPVETSLN
101: FSNQVSMDQK VGSKRKDCVN NGGRREPHLL KEHVLAERKR RQKLNERLIA LSALLPGLKK TDKATVLEDA IKHLKQLQER VKKLEEERVV TKKMDQSIIL
201: VKRSQVYLDD DSSSYSSTCS AASPLSSSSD EVSIFKQTMP MIEARVSDRD LLIRVHCEKN KGCMIKILSS LEKFRLEVVN SFTLPFGNST LVITILTKMD
301: NKFSRPVEEV VKNIRVALAE

Arabidopsis Description

NAI1NAI1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.