Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G306400.1 | Wheat | nucleus | 36.39 | 81.82 |
| TraesCS4A01G408700.1 | Wheat | nucleus | 58.76 | 80.74 |
| TraesCS4B01G308200.1 | Wheat | nucleus | 72.51 | 74.72 |
| TraesCS4B01G308300.1 | Wheat | nucleus | 72.24 | 73.63 |
| HORVU4Hr1G078880.2 | Barley | nucleus | 65.77 | 66.85 |
| HORVU3Hr1G002620.1 | Barley | plastid | 41.24 | 66.52 |
| Zm00001d038966_P001 | Maize | plastid | 29.92 | 54.41 |
| Zm00001d026009_P001 | Maize | plastid | 29.92 | 54.41 |
| Zm00001d003604_P001 | Maize | nucleus | 41.51 | 45.83 |
| EES10849 | Sorghum | nucleus | 41.51 | 44.64 |
| KXG37866 | Sorghum | nucleus | 43.4 | 43.4 |
| HORVU4Hr1G003210.1 | Barley | nucleus | 42.32 | 43.01 |
| Zm00001d033412_P001 | Maize | nucleus | 42.32 | 42.55 |
| Zm00001d033413_P001 | Maize | nucleus | 36.39 | 42.45 |
| Zm00001d025462_P001 | Maize | nucleus | 36.66 | 41.21 |
| HORVU0Hr1G014300.1 | Barley | nucleus | 35.31 | 39.7 |
| EER93685 | Sorghum | mitochondrion | 37.47 | 37.37 |
| Zm00001d024781_P001 | Maize | nucleus | 34.77 | 36.54 |
| HORVU5Hr1G002090.11 | Barley | nucleus | 36.66 | 35.6 |
| OQU75589 | Sorghum | nucleus | 36.12 | 34.81 |
| HORVU4Hr1G003340.3 | Barley | nucleus | 42.05 | 33.69 |
| OQU77369 | Sorghum | nucleus | 38.01 | 33.57 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 26.42 | 28.74 |
| HORVU7Hr1G120420.2 | Barley | nucleus | 28.3 | 27.2 |
| HORVU0Hr1G025420.1 | Barley | cytosol, nucleus | 9.43 | 21.34 |
| HORVU5Hr1G080080.1 | Barley | nucleus, plastid | 11.05 | 19.52 |
| HORVU5Hr1G080040.1 | Barley | nucleus | 12.4 | 17.16 |
| HORVU5Hr1G079900.1 | Barley | cytosol | 11.59 | 15.93 |
| HORVU4Hr1G065640.6 | Barley | nucleus | 12.4 | 13.49 |
| HORVU3Hr1G066390.1 | Barley | nucleus | 12.4 | 9.89 |
| HORVU1Hr1G050560.1 | Barley | nucleus | 16.71 | 9.06 |
| HORVU2Hr1G096810.5 | Barley | nucleus | 13.21 | 8.73 |
| HORVU1Hr1G020370.2 | Barley | extracellular, nucleus | 11.86 | 8.64 |
| HORVU3Hr1G057280.2 | Barley | nucleus | 14.82 | 7.17 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | UniProt:A0A287PTC0 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| EnsemblPlantsGene:HORVU4Hr1G078910 | EnsemblPlants:HORVU4Hr1G078910.2 | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF74 | SMART:SM00353 | SUPFAM:SSF47459 | TMHMM:TMhelix | UniParc:UPI000B46EF7F |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:609751290..609753544
Molecular Weight (calculated)
40632.8 Da
IEP (calculated)
7.894
GRAVY (calculated)
-0.180
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MLMDDMVDSR MFMQWAVNTL AQQDPGRADG VDQRSAGFPC LQALRDSSEL VEAQDRLSFS DNTGRGGGII NPASDAPVHL GSWSTSSPTS GGLFAPSSMS
101: STGTSNTLSM SWNFGAVLPP QPVSSSGGGM IAARAPLGSA VSQPTRRTSK KSTPYAQDHI MAERKRREKI NQRFIELSAV IPGLKKMDKG TILADATTYV
201: KELQERVKYL EAAGGNHRSV ETVVLVTKPQ CLVAPDNEAC PGSFLAAGTP ARRELLPEIE AKFSEDNMMV RIHCEMNGKG LVARVLAEVE ELHLRIVHND
301: VMPFTASTVI ITTMAKASSH QYWSYVLYIC ILLFVHSSFF EYIHKSIKAY HAFYDMHTCK IPIKIVRESN G
101: STGTSNTLSM SWNFGAVLPP QPVSSSGGGM IAARAPLGSA VSQPTRRTSK KSTPYAQDHI MAERKRREKI NQRFIELSAV IPGLKKMDKG TILADATTYV
201: KELQERVKYL EAAGGNHRSV ETVVLVTKPQ CLVAPDNEAC PGSFLAAGTP ARRELLPEIE AKFSEDNMMV RIHCEMNGKG LVARVLAEVE ELHLRIVHND
301: VMPFTASTVI ITTMAKASSH QYWSYVLYIC ILLFVHSSFF EYIHKSIKAY HAFYDMHTCK IPIKIVRESN G
001: MDEDFFLPDF SLVDIDFDFN IYEENNLSPD ESLSNSRRAD QSSKFDHQMH FECLREKPKA AVKPMMKINN KQQLISFDFS SNVISSPAAE EIIMDKLVGR
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQVIINNYI YMQY
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQVIINNYI YMQY
Arabidopsis Description
BHLH19Uncharacterized protein At2g22760 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.