Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G406900.1 | Wheat | nucleus | 85.74 | 84.83 |
| TraesCS2A01G409600.2 | Wheat | nucleus, plastid | 83.78 | 84.23 |
| TraesCS2B01G428000.1 | Wheat | nucleus | 84.67 | 82.9 |
| TraesCS2A01G409400.1 | Wheat | nucleus | 83.6 | 82.57 |
| TraesCSU01G228400.1 | Wheat | nucleus | 52.94 | 80.93 |
| TraesCSU01G237100.1 | Wheat | nucleus | 52.76 | 80.65 |
| TraesCS2D01G406800.1 | Wheat | plastid | 65.24 | 78.71 |
| TraesCS4B01G397400.1 | Wheat | nucleus | 64.17 | 63.83 |
| TraesCS5A01G489500.1 | Wheat | nucleus | 64.35 | 63.33 |
| TraesCSU01G029400.1 | Wheat | nucleus | 63.28 | 62.06 |
| TraesCS5A01G558500.1 | Wheat | nucleus | 64.53 | 61.88 |
| TraesCS2D01G575600.3 | Wheat | nucleus, plastid | 61.85 | 58.91 |
| TraesCS4D01G224600.1 | Wheat | nucleus | 56.86 | 57.27 |
| TraesCS4B01G397300.1 | Wheat | nucleus | 41.0 | 56.51 |
| Os01t0577300-00 | Rice | cytosol | 12.12 | 55.74 |
| OQU82117 | Sorghum | nucleus | 58.29 | 55.42 |
| Zm00001d000236_P001 | Maize | nucleus, plastid | 54.9 | 55.3 |
| OQU82120 | Sorghum | nucleus | 57.58 | 54.93 |
| OQU81560 | Sorghum | nucleus | 56.86 | 54.16 |
| Zm00001d026147_P002 | Maize | nucleus | 57.93 | 52.76 |
| GSMUA_Achr11P... | Banana | nucleus | 39.04 | 46.5 |
| OQU82119 | Sorghum | nucleus | 44.74 | 45.97 |
| Os01t0576100-00 | Rice | nucleus | 23.89 | 42.68 |
| GSMUA_Achr8P11430_001 | Banana | nucleus | 39.93 | 41.03 |
| GSMUA_Achr11P... | Banana | nucleus | 38.5 | 39.13 |
| GSMUA_Achr11P... | Banana | nucleus | 39.57 | 37.44 |
| GSMUA_Achr5P20600_001 | Banana | nucleus | 38.68 | 36.9 |
| VIT_02s0025g03450.t01 | Wine grape | nucleus | 39.93 | 35.67 |
| AT1G63650.1 | Thale cress | nucleus | 36.19 | 34.06 |
| VIT_15s0046g02560.t01 | Wine grape | nucleus | 39.39 | 33.54 |
| KRH41187 | Soybean | nucleus | 37.08 | 33.02 |
| Bra027796.1-P | Field mustard | nucleus | 35.47 | 32.84 |
| Solyc08g081140.2.1 | Tomato | nucleus | 36.54 | 32.75 |
| Bra025508.1-P | Field mustard | nucleus | 36.54 | 32.59 |
| KRH59908 | Soybean | nucleus | 36.54 | 32.49 |
| Bra027653.1-P | Field mustard | nucleus | 34.4 | 32.38 |
| AT5G41315.2 | Thale cress | nucleus | 35.83 | 31.16 |
| KRH48144 | Soybean | nucleus | 35.12 | 30.31 |
| KRH65046 | Soybean | nucleus | 34.76 | 30.14 |
| AT4G00480.2 | Thale cress | nucleus | 29.23 | 28.28 |
| CDX77694 | Canola | nucleus | 11.41 | 25.3 |
| PGSC0003DMT400032140 | Potato | nucleus | 16.22 | 25.28 |
| Bra000970.1-P | Field mustard | nucleus | 29.06 | 24.92 |
| HORVU3Hr1G066390.1 | Barley | nucleus | 18.89 | 22.8 |
| HORVU1Hr1G020370.2 | Barley | extracellular, nucleus | 19.96 | 22.0 |
| HORVU0Hr1G025420.1 | Barley | cytosol, nucleus | 6.24 | 21.34 |
| Bra037343.1-P | Field mustard | cytosol | 26.92 | 21.24 |
| HORVU5Hr1G080040.1 | Barley | nucleus | 9.98 | 20.9 |
| HORVU5Hr1G080080.1 | Barley | nucleus, plastid | 7.66 | 20.48 |
| HORVU1Hr1G050560.1 | Barley | nucleus | 21.39 | 17.54 |
| HORVU5Hr1G079900.1 | Barley | cytosol | 8.38 | 17.41 |
| HORVU3Hr1G002620.1 | Barley | plastid | 6.6 | 16.09 |
| HORVU0Hr1G014300.1 | Barley | nucleus | 9.45 | 16.06 |
| HORVU5Hr1G002090.11 | Barley | nucleus | 10.87 | 15.97 |
| HORVU3Hr1G057280.2 | Barley | nucleus | 20.68 | 15.12 |
| HORVU4Hr1G003210.1 | Barley | nucleus | 9.8 | 15.07 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 8.91 | 14.66 |
| HORVU4Hr1G078880.2 | Barley | nucleus | 9.09 | 13.97 |
| HORVU4Hr1G078910.2 | Barley | nucleus | 8.73 | 13.21 |
| HORVU4Hr1G003340.3 | Barley | nucleus | 10.16 | 12.31 |
| HORVU7Hr1G120420.2 | Barley | nucleus | 8.38 | 12.18 |
| HORVU4Hr1G065640.6 | Barley | nucleus | 7.13 | 11.73 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A287J214 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | EnsemblPlantsGene:HORVU2Hr1G096810 | EnsemblPlants:HORVU2Hr1G096810.5 | InterPro:IPR011598 |
| InterPro:IPR036638 | InterPro:MYC/MYB_N | PFAM:PF00010 | PFAM:PF14215 | PFscan:PS50888 | PANTHER:PTHR11514 |
| PANTHER:PTHR11514:SF94 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000B47C9E9 | InterPro:bHLH_dom | SEG:seg |
Description
No Description!
Coordinates
chrchr2H:-:676847917..676852459
Molecular Weight (calculated)
60811.2 Da
IEP (calculated)
5.051
GRAVY (calculated)
-0.234
Length
561 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMALPIVRP SQEEPPTGEQ FSYQLAAAVR SINWSYAIFW SISTSRPGVL TWKDGFYNGE IKTRKVTSSA DLTADQLLLQ RSEQLRELYQ SLLSGQCDHR
101: GRRPAAALSP EDLGDAEWYY AVCMSYAFRP GQGLPGRSFA SNEPVWLCNA QCADTKTFQR SLLAKTTSIQ TVACIPLMGG VLELGTTDTV LEDRDMVNRI
201: STSFWDLKIP TSSKPEEPSS PSADDAGEAD IVFQDLDHNT MAAMIPGELE LGEVECLSDD NLERITKEIN GFYGLCDELD VGALDENWII GGSFEVMSSP
301: EAPPAPAATG GITDGIVTLS AAASSLSSCF TAWKRSWDSA EDMAAPVAGQ SQKLLKKALA GGVWAINGGG GGGTARAQES SNTKNHVISE RRRREKLNEM
401: FLILKSLVPS IHKVDKASIL AETIAYLREL EQRVEELESN RAPSRPAGAA VRRHHDAAAK KMLAGSKRKA SELGGDDGPN SVVNVTVTEK EVLLEVQCRW
501: KELLMTQVFD AIKSLRLDVL SVRASTPDGL LALKIRAQFA GRGAVEPGMI IGALQTATRG R
101: GRRPAAALSP EDLGDAEWYY AVCMSYAFRP GQGLPGRSFA SNEPVWLCNA QCADTKTFQR SLLAKTTSIQ TVACIPLMGG VLELGTTDTV LEDRDMVNRI
201: STSFWDLKIP TSSKPEEPSS PSADDAGEAD IVFQDLDHNT MAAMIPGELE LGEVECLSDD NLERITKEIN GFYGLCDELD VGALDENWII GGSFEVMSSP
301: EAPPAPAATG GITDGIVTLS AAASSLSSCF TAWKRSWDSA EDMAAPVAGQ SQKLLKKALA GGVWAINGGG GGGTARAQES SNTKNHVISE RRRREKLNEM
401: FLILKSLVPS IHKVDKASIL AETIAYLREL EQRVEELESN RAPSRPAGAA VRRHHDAAAK KMLAGSKRKA SELGGDDGPN SVVNVTVTEK EVLLEVQCRW
501: KELLMTQVFD AIKSLRLDVL SVRASTPDGL LALKIRAQFA GRGAVEPGMI IGALQTATRG R
001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL
Arabidopsis Description
TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.