Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39747 | Canola | nucleus | 75.5 | 87.12 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 25.43 | 86.32 |
| Bra025508.1-P | Field mustard | nucleus | 83.72 | 85.85 |
| CDY58950 | Canola | nucleus | 75.97 | 84.92 |
| AT1G63650.1 | Thale cress | nucleus | 72.87 | 78.86 |
| VIT_02s0025g03450.t01 | Wine grape | nucleus | 50.85 | 52.23 |
| GSMUA_Achr11P... | Banana | nucleus | 35.5 | 48.62 |
| Os04t0557500-00 | Rice | mitochondrion, plasma membrane | 13.49 | 48.33 |
| Solyc08g081140.2.1 | Tomato | nucleus | 44.03 | 45.37 |
| GSMUA_Achr8P11430_001 | Banana | nucleus | 36.12 | 42.67 |
| GSMUA_Achr11P... | Banana | nucleus | 37.98 | 41.32 |
| GSMUA_Achr11P... | Banana | nucleus | 35.35 | 41.3 |
| GSMUA_Achr5P20600_001 | Banana | nucleus | 35.19 | 38.61 |
| PGSC0003DMT400032140 | Potato | nucleus | 21.4 | 38.33 |
| TraesCS2A01G409600.2 | Wheat | nucleus, plastid | 31.01 | 35.84 |
| HORVU2Hr1G096810.5 | Barley | nucleus | 31.16 | 35.83 |
| TraesCS2D01G406900.1 | Wheat | nucleus | 31.01 | 35.27 |
| TraesCSU01G116000.1 | Wheat | nucleus | 24.65 | 34.87 |
| TraesCS2B01G428000.1 | Wheat | nucleus | 30.85 | 34.73 |
| TraesCS2A01G409400.1 | Wheat | nucleus | 30.54 | 34.68 |
| Os04t0557200-01 | Rice | cytosol, nucleus, peroxisome | 29.77 | 34.35 |
| TraesCS4B01G397400.1 | Wheat | nucleus | 29.46 | 33.69 |
| Os01t0577300-00 | Rice | cytosol | 6.36 | 33.61 |
| AT4G09820.1 | Thale cress | nucleus | 26.98 | 33.59 |
| TraesCSU01G029400.1 | Wheat | nucleus | 29.61 | 33.39 |
| TraesCS5A01G489500.1 | Wheat | nucleus | 29.3 | 33.16 |
| TraesCS2D01G406800.1 | Wheat | plastid | 23.72 | 32.9 |
| Os04t0557800-00 | Rice | mitochondrion | 29.15 | 32.75 |
| AT4G00480.2 | Thale cress | nucleus | 29.3 | 32.59 |
| Zm00001d000236_P001 | Maize | nucleus, plastid | 27.91 | 32.32 |
| OQU82120 | Sorghum | nucleus | 29.15 | 31.97 |
| TraesCS5A01G558500.1 | Wheat | nucleus | 28.99 | 31.97 |
| TraesCS4D01G224600.1 | Wheat | nucleus | 27.44 | 31.78 |
| Zm00001d026147_P002 | Maize | nucleus | 30.23 | 31.66 |
| OQU82117 | Sorghum | nucleus | 28.84 | 31.53 |
| OQU81560 | Sorghum | nucleus | 28.68 | 31.41 |
| TraesCS4B01G397800.1 | Wheat | nucleus | 24.81 | 31.37 |
| TraesCS2D01G575600.3 | Wheat | nucleus, plastid | 28.37 | 31.07 |
| TraesCS4B01G397300.1 | Wheat | nucleus | 16.59 | 26.29 |
| TraesCSU01G237100.1 | Wheat | nucleus | 14.88 | 26.16 |
| TraesCSU01G228400.1 | Wheat | nucleus | 14.88 | 26.16 |
| Os01t0576100-00 | Rice | nucleus | 11.63 | 23.89 |
| OQU82119 | Sorghum | nucleus | 19.22 | 22.71 |
| Os11t0258700-00 | Rice | mitochondrion | 15.66 | 20.91 |
| AT4G16430.1 | Thale cress | nucleus | 15.04 | 20.77 |
| AT1G01260.1 | Thale cress | nucleus | 18.29 | 20.0 |
| AT4G00870.1 | Thale cress | nucleus, plastid | 12.56 | 19.15 |
| AT2G46510.1 | Thale cress | nucleus | 16.59 | 18.9 |
| AT4G17880.1 | Thale cress | nucleus | 17.21 | 18.85 |
| AT5G46760.1 | Thale cress | nucleus | 16.59 | 18.07 |
| AT4G37850.1 | Thale cress | nucleus | 9.15 | 17.99 |
| AT2G22760.1 | Thale cress | nucleus | 8.06 | 17.63 |
| AT5G46830.1 | Thale cress | nucleus | 13.95 | 17.61 |
| AT1G32640.1 | Thale cress | nucleus | 15.66 | 16.21 |
| AT2G22750.3 | Thale cress | nucleus | 8.06 | 15.62 |
| AT2G22770.1 | Thale cress | nucleus | 7.44 | 15.0 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:834133 | UniProt:A0A178UFB0 | UniProt:A0A1R7T3F7 | ProteinID:ANM71158.1 |
| ArrayExpress:AT5G41315 | EnsemblPlantsGene:AT5G41315 | RefSeq:AT5G41315 | TAIR:AT5G41315 | RefSeq:AT5G41315-TAIR-G | EnsemblPlants:AT5G41315.2 |
| Unigene:At.27204 | ncoils:Coil | Symbol:GL3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| InterPro:MYC/MYB_N | RefSeq:NP_001332706.1 | ProteinID:OAO92320.1 | PFAM:PF00010 | PFAM:PF14215 | PFscan:PS50888 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF28 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0007DF059C | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
GL3Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1R7T3F7]
Coordinates
chr5:+:16529090..16533287
Molecular Weight (calculated)
71525.2 Da
IEP (calculated)
5.676
GRAVY (calculated)
-0.451
Length
645 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYRDEETMA TGQNRTTVPE NLKKHLAVSV RNIQWSYGIF WSVSASQSGV LEWGDGYYNG DIKTRKTIQA SEIKADQLGL RRSEQLSELY ESLSVAESSS
101: SGVAAGSQVT RRASAAALSP EDLADTEWYY LVCMSFVFNI GEGMPGRTFA NGEPIWLCNA HTADSKVFSR SLLAKSAAVK TVVCFPFLGG VVEIGTTEHI
201: TEDMNVIQCV KTSFLEAPDP YATILPARSD YHIDNVLDPQ QILGDEIYAP MFSTEPFPTA SPSRTTNGFD QEHEQVADDH DSFMTERITG GASQVQSWQL
301: MDDELSNCVH QSLNSSDCVS QTFVEGAAGR VAYGARKSRV QRLGQIQEQQ RNVKTLSFDP RNDDVHYQSV ISTIFKTNHQ LILGPQFRNC DKQSSFTRWK
401: KSSSSSSGTA TVTAPSQGML KKIIFDVPRV HQKEKLMLDS PEARDETGNH AVLEKKRREK LNERFMTLRK IIPSINKIDK VSILDDTIEY LQELERRVQE
501: LESCRESTDT ETRGTMTMKR KKPCDAGERT SANCANNETG NGKKVSVNNV GEAEPADTGF TGLTDNLRIG SFGNEVVIEL RCAWREGVLL EIMDVISDLH
601: LDSHSVQSST GDGLLCLTVN CKHKGSKIAT PGMIKEALQR VAWIC
101: SGVAAGSQVT RRASAAALSP EDLADTEWYY LVCMSFVFNI GEGMPGRTFA NGEPIWLCNA HTADSKVFSR SLLAKSAAVK TVVCFPFLGG VVEIGTTEHI
201: TEDMNVIQCV KTSFLEAPDP YATILPARSD YHIDNVLDPQ QILGDEIYAP MFSTEPFPTA SPSRTTNGFD QEHEQVADDH DSFMTERITG GASQVQSWQL
301: MDDELSNCVH QSLNSSDCVS QTFVEGAAGR VAYGARKSRV QRLGQIQEQQ RNVKTLSFDP RNDDVHYQSV ISTIFKTNHQ LILGPQFRNC DKQSSFTRWK
401: KSSSSSSGTA TVTAPSQGML KKIIFDVPRV HQKEKLMLDS PEARDETGNH AVLEKKRREK LNERFMTLRK IIPSINKIDK VSILDDTIEY LQELERRVQE
501: LESCRESTDT ETRGTMTMKR KKPCDAGERT SANCANNETG NGKKVSVNNV GEAEPADTGF TGLTDNLRIG SFGNEVVIEL RCAWREGVLL EIMDVISDLH
601: LDSHSVQSST GDGLLCLTVN CKHKGSKIAT PGMIKEALQR VAWIC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.