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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • nucleus 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
iPSORT:plastid
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G409400.1
TraesCS2A01G409600.2
TraesCS2B01G428000.1
TraesCS2D01G406800.1
TraesCS2D01G406900.1
TraesCS2D01G575600.3
TraesCS3A01G046800.1
TraesCS3A01G257800.1
TraesCS3B01G036000.1
TraesCS3B01G290600.1
TraesCS3D01G033100.1
TraesCS3D01G257800.1
TraesCS4B01G397300.1
TraesCS4B01G397400.1
TraesCS4B01G397800.1
TraesCS4D01G224600.1
TraesCS5A01G489500.1
TraesCS5A01G558500.1
TraesCS6A01G259400.1
TraesCS6B01G286700.1
TraesCSU01G029400.1
TraesCSU01G116000.1
TraesCSU01G228400.1
TraesCSU01G237100.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G63650.1 TraesCS2A01G409400.1 AT1G63650.1 12917293
AT1G63650.1 TraesCS2A01G409600.2 AT1G63650.1 12917293
AT1G63650.1 TraesCS2B01G428000.1 AT1G63650.1 12917293
AT1G63650.1 TraesCS2D01G406800.1 AT1G63650.1 12917293
AT1G63650.1 TraesCS2D01G406900.1 AT1G63650.1 12917293
AT1G63650.1 TraesCS2D01G575600.3 AT1G63650.1 12917293
AT1G63650.1 TraesCS4B01G397300.1 AT1G63650.1 12917293
AT1G63650.1 TraesCS4B01G397400.1 AT1G63650.1 12917293
AT1G63650.1 TraesCS4B01G397800.1 AT1G63650.1 12917293
AT1G63650.1 TraesCS4D01G224600.1 AT1G63650.1 12917293
AT1G63650.1 TraesCS5A01G489500.1 AT1G63650.1 12917293
AT1G63650.1 TraesCS5A01G558500.1 AT1G63650.1 12917293
AT1G63650.1 TraesCSU01G029400.1 AT1G63650.1 12917293
AT1G63650.1 TraesCSU01G116000.1 AT1G63650.1 12917293
AT1G63650.1 TraesCSU01G228400.1 AT1G63650.1 12917293
AT1G63650.1 TraesCSU01G237100.1 AT1G63650.1 12917293
AT1G63650.1 TraesCS3A01G046800.1 AT1G71030.1 15361138
AT1G63650.1 TraesCS3B01G036000.1 AT1G71030.1 15361138
AT1G63650.1 TraesCS3D01G033100.1 AT1G71030.1 15361138
AT1G63650.1 TraesCS3A01G257800.1 AT3G13540.1 15361138
AT1G63650.1 TraesCS3B01G290600.1 AT3G13540.1 15361138
AT1G63650.1 TraesCS3D01G257800.1 AT3G13540.1 15361138
AT1G63650.1 TraesCS6A01G259400.1 AT5G24520.1 12917293
AT1G63650.1 TraesCS6B01G286700.1 AT5G24520.1 12917293
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCSU01G228400.1 Wheat nucleus 59.26 91.55
TraesCS2B01G428000.1 Wheat nucleus 92.42 91.45
TraesCSU01G237100.1 Wheat nucleus 59.08 91.28
TraesCS2A01G409400.1 Wheat nucleus 89.24 89.08
HORVU2Hr1G096810.5 Barley nucleus 84.83 85.74
TraesCS2D01G406800.1 Wheat plastid 68.78 83.87
TraesCS2D01G575600.3 Wheat nucleus, plastid 62.79 60.44
TraesCS4D01G224600.1 Wheat nucleus 57.85 58.89
OQU82117 Sorghum nucleus 60.49 58.14
OQU81560 Sorghum nucleus 60.32 58.06
OQU82120 Sorghum nucleus 59.26 57.14
Zm00001d000236_P001 Maize nucleus, plastid 56.08 57.09
Zm00001d026147_P002 Maize nucleus 60.32 55.52
Os01t0577300-00 Rice cytosol 11.29 52.46
OQU82119 Sorghum nucleus 46.56 48.35
GSMUA_Achr11P... Banana nucleus 38.8 46.71
Os01t0576100-00 Rice nucleus 24.16 43.63
GSMUA_Achr8P11430_001 Banana nucleus 40.56 42.12
TraesCS1D01G094000.1 Wheat cytosol, mitochondrion, nucleus, plastid 14.46 41.0
GSMUA_Achr11P... Banana nucleus 38.8 39.86
GSMUA_Achr11P... Banana nucleus 39.51 37.77
GSMUA_Achr5P20600_001 Banana nucleus 38.45 37.07
VIT_02s0025g03450.t01 Wine grape nucleus 40.04 36.15
Solyc08g081140.2.1 Tomato nucleus 37.39 33.87
VIT_15s0046g02560.t01 Wine grape nucleus 39.33 33.84
KRH41187 Soybean nucleus 37.57 33.81
KRH59908 Soybean nucleus 37.21 33.44
AT1G63650.1 Thale cress nucleus 35.1 33.39
Bra025508.1-P Field mustard nucleus 36.16 32.59
Bra027796.1-P Field mustard nucleus 34.04 31.85
Bra027653.1-P Field mustard nucleus 33.16 31.54
KRH65046 Soybean nucleus 35.45 31.07
AT5G41315.2 Thale cress nucleus 35.27 31.01
KRH48144 Soybean nucleus 35.27 30.77
AT4G00480.2 Thale cress nucleus 28.75 28.1
PGSC0003DMT400032140 Potato nucleus 16.75 26.39
CDX77694 Canola nucleus 11.46 25.69
Bra000970.1-P Field mustard nucleus 28.4 24.62
TraesCS3D01G253700.1 Wheat nucleus 18.87 23.01
TraesCS1D01G094200.1 Wheat nucleus 24.34 21.87
Bra037343.1-P Field mustard cytosol 26.63 21.24
TraesCS1D01G374800.1 Wheat nucleus 9.35 20.0
TraesCS5D01G313700.1 Wheat nucleus 9.52 19.64
TraesCS4D01G306400.1 Wheat nucleus 5.64 19.39
TraesCS4D01G235900.1 Wheat nucleus 10.93 19.25
TraesCS4D01G275500.1 Wheat nucleus 20.28 19.23
TraesCS3D01G166300.2 Wheat nucleus 20.63 18.72
TraesCS5D01G313400.1 Wheat nucleus 8.99 18.68
TraesCS5D01G313500.1 Wheat nucleus 8.82 17.92
TraesCS5D01G313600.1 Wheat nucleus 8.82 17.92
TraesCS4D01G330500.1 Wheat nucleus 9.88 17.72
TraesCS7D01G102200.1 Wheat nucleus 7.94 17.58
TraesCS1D01G196900.1 Wheat nucleus 20.99 17.12
TraesCS5D01G517900.1 Wheat nucleus 8.82 15.43
TraesCS5D01G020600.1 Wheat nucleus 10.05 15.24
TraesCS4D01G018800.2 Wheat nucleus 9.7 15.19
TraesCS4D01G019100.1 Wheat nucleus 9.7 15.11
TraesCS4D01G019200.1 Wheat nucleus 9.52 15.0
TraesCS4D01G306300.1 Wheat nucleus 8.82 14.66
TraesCS4D01G018700.1 Wheat nucleus 9.17 14.4
TraesCS4D01G056900.2 Wheat nucleus 9.52 14.4
TraesCS3D01G014900.1 Wheat nucleus 8.11 13.69
Protein Annotations
EnsemblPlants:TraesCS2D01G406900.1EnsemblPlantsGene:TraesCS2D01G406900Gene3D:4.10.280.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638InterPro:MYC/MYB_NInterPro:bHLH_dom
ncoils:CoilPANTHER:PTHR11514PANTHER:PTHR11514:SF94PFAM:PF00010PFAM:PF14215PFscan:PS50888
SEG:segSMART:SM00353SUPFAM:SSF47459TIGR:cd00083MapMan:15.5.32:
Description
No Description!
Coordinates
chr2D:+:522521895..522526799
Molecular Weight (calculated)
61825.4 Da
IEP (calculated)
4.950
GRAVY (calculated)
-0.269
Length
567 amino acids
Sequence
(BLAST)
001: MALPVVHPSQ EEPTLPPPAG KQLSNQLAAA VRSINWSYAI FWSISTSRPG VLTWKDGFYN GEIKTRKVTS SADLTADQLV LQRSEQLREL YESLLSGQCD
101: HRARRPAAAL SPEDLGDAEW YYTVCMSYAF RLGQGLPGRS FASNEHVWLC NAQCADTKTF QRALLAKTAS IQTVACIPLM SGVLELGTTN TVLEDMDMVN
201: RIGTSFWDLK FPTCSKSEEP NSSPSADDTG DADMVFEDLN HNTMATMMPG ELELGEVECL SDGSLEQITK EINGFYGLCD ELDVGALEEN WIMGGSFEVM
301: SSPEALPAPA ATDGITDGAV TFSSVEPSRS SCFTAWKRSL DSTKDVAASV AGESQKLLKK VLAGGAWANN GGDGTARAQE STNTKNHVIS ERRRREKLNE
401: MFLILKSLVP SIHKVDKASI LAETIAYLRE LEQKVEELES NRVAGTAVRK LHDVSGKKVL AGSKRKASEL GGDDTERVLP KDDGPSNIVN VTVTDKEVLL
501: EVQCRWKELL MTQVFDAIKS LRLDVLSVRA STPDGLLALK IRAQFAGPGA VEPGMISEAL QKAIRRR
Best Arabidopsis Sequence Match ( AT4G09820.1 )
(BLAST)
001: MDESSIIPAE KVAGAEKKEL QGLLKTAVQS VDWTYSVFWQ FCPQQRVLVW GNGYYNGAIK TRKTTQPAEV TAEEAALERS QQLRELYETL LAGESTSEAR
101: ACTALSPEDL TETEWFYLMC VSFSFPPPSG MPGKAYARRK HVWLSGANEV DSKTFSRAIL AKSAKIQTVV CIPMLDGVVE LGTTKKVRED VEFVELTKSF
201: FYDHCKTNPK PALSEHSTYE VHEEAEDEEE VEEEMTMSEE MRLGSPDDED VSNQNLHSDL HIESTHTLDT HMDMMNLMEE GGNYSQTVTT LLMSHPTSLL
301: SDSVSTSSYI QSSFATWRVE NGKEHQQVKT APSSQWVLKQ MIFRVPFLHD NTKDKRLPRE DLSHVVAERR RREKLNEKFI TLRSMVPFVT KMDKVSILGD
401: TIAYVNHLRK RVHELENTHH EQQHKRTRTC KRKTSEEVEV SIIENDVLLE MRCEYRDGLL LDILQVLHEL GIETTAVHTS VNDHDFEAEI RAKVRGKKAS
501: IAEVKRAIHQ VIIHDTNL
Arabidopsis Description
TT8Transcription factor TT8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT81]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.