Factsheet for TraesCS6B01G286700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G102400.2
TraesCS1B01G112900.1
TraesCS1B01G113100.4
TraesCS1D01G094200.1
TraesCS2A01G409400.1
TraesCS2A01G409600.2
TraesCS2B01G428000.1
TraesCS2D01G406800.1
TraesCS2D01G406900.1
TraesCS2D01G575600.3
TraesCS4B01G397300.1
TraesCS4B01G397400.1
TraesCS4B01G397800.1
TraesCS4D01G224600.1
TraesCS5A01G489500.1
TraesCS5A01G558500.1
TraesCSU01G029400.1
TraesCSU01G116000.1
TraesCSU01G228400.1
TraesCSU01G237100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24520.1	TraesCS2A01G409400.1	AT1G63650.1	12917293
AT5G24520.1	TraesCS2A01G409600.2	AT1G63650.1	12917293
AT5G24520.1	TraesCS2B01G428000.1	AT1G63650.1	12917293
AT5G24520.1	TraesCS2D01G406800.1	AT1G63650.1	12917293
AT5G24520.1	TraesCS2D01G406900.1	AT1G63650.1	12917293
AT5G24520.1	TraesCS2D01G575600.3	AT1G63650.1	12917293
AT5G24520.1	TraesCS4B01G397300.1	AT1G63650.1	12917293
AT5G24520.1	TraesCS4B01G397400.1	AT1G63650.1	12917293
AT5G24520.1	TraesCS4B01G397800.1	AT1G63650.1	12917293
AT5G24520.1	TraesCS4D01G224600.1	AT1G63650.1	12917293
AT5G24520.1	TraesCS5A01G489500.1	AT1G63650.1	12917293
AT5G24520.1	TraesCS5A01G558500.1	AT1G63650.1	12917293
AT5G24520.1	TraesCSU01G029400.1	AT1G63650.1	12917293
AT5G24520.1	TraesCSU01G116000.1	AT1G63650.1	12917293
AT5G24520.1	TraesCSU01G228400.1	AT1G63650.1	12917293
AT5G24520.1	TraesCSU01G237100.1	AT1G63650.1	12917293
AT5G24520.1	TraesCS1A01G102400.2	AT4G09820.1	15255866
AT5G24520.1	TraesCS1B01G112900.1	AT4G09820.1	15255866
AT5G24520.1	TraesCS1B01G113100.4	AT4G09820.1	15255866
AT5G24520.1	TraesCS1D01G094200.1	AT4G09820.1	15255866

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G259400.1	Wheat	cytosol	99.44	99.44
HORVU0Hr1G016450.1	Barley	cytosol	98.6	93.1
Zm00001d017616_P001	Maize	extracellular	83.99	84.7
Os02t0682500-01	Rice	cytosol	82.87	83.1
EES05725	Sorghum	cytosol	74.16	83.02
CDX80449	Canola	cytosol	48.03	71.85
GSMUA_Achr4P29160_001	Banana	cytosol	61.8	69.4
Bra009770.1-P	Field mustard	cytosol	60.67	64.09
KRH53635	Soybean	cytosol	60.11	63.69
KRH64293	Soybean	cytosol	59.55	63.28
VIT_16s0098g00870.t01	Wine grape	nucleus	59.27	62.8
AT5G24520.1	Thale cress	cytosol	60.11	62.76
PGSC0003DMT400068077	Potato	cytosol	59.55	61.99
Solyc03g097340.1.1	Tomato	cytosol	58.99	61.4
PGSC0003DMT400001513	Potato	nucleus	58.43	60.82
CDY05440	Canola	cytosol	20.22	60.0
Bra029411.1-P	Field mustard	cytosol	20.22	60.0
PGSC0003DMT400094468	Potato	cytosol	52.81	54.81
Solyc03g081210.1.1	Tomato	cytosol	50.28	52.34
CDY05439	Canola	cytosol	12.92	45.1
Bra029410.1-P	Field mustard	cytosol	12.92	45.1
TraesCS6B01G221400.3	Wheat	cytoskeleton, cytosol, nucleus	52.25	45.04
GSMUA_Achr5P10240_001	Banana	nucleus	23.03	33.61

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0008150	GO:GO:0009719	GO:GO:0009723	GO:GO:0009733	GO:GO:0009957	GO:GO:0009987
GO:GO:0010026	GO:GO:0030154	GO:GO:0032880	GO:GO:0045165	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19919
PANTHER:PTHR19919:SF2	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS6B01G286700	EnsemblPlants:TraesCS6B01G286700.1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chr6B:-:516487086..516488156

Molecular Weight (calculated)

38355.2 Da

IEP (calculated)

4.760

GRAVY (calculated)

-0.034

Length

356 amino acids

Sequence
(BLAST)

001: MDQPKPTPSA AASPAGADAA PNPYAFTCEL PHSIYALAFS PSAPVLAAGS FLEDLHNRVS LLCFDSVHPT AASFRAVPSL SFDHPYPPTK LQFNPRAAST
101: PLLASSSDAL RLWHAPLDDL SASAPAPELR SVLDNRKASA SDFCAPLTSF DWNEIEPRRI GTASIDTTCT VWDIERGVVE TQLIAHDKAV HDIAWGEAGV
201: FASVSADGSV RVFDLRDKEH STIVYESPRP DTPLLRLAWN RYDLRYMAAL LMDSNAVVVL DIRAPGVPVA ELHRHGGCVN AVAWAPQAAR HLCSAGDDGQ
301: ALIWELPEAP AAVPPEGIDP VLVYDAGAEI NQLQWVAGHP DWMGISIENK VQLLRV

Best Arabidopsis Sequence Match ( AT5G24520.4 )
(BLAST)

001: MDNSAPDSLS RSETAVTYDS PYPLYAMAFS SLRSSSGHRI AVGSFLEDYN NRIDILSFDS DSMTVKPLPN LSFEHPYPPT KLMFSPPSLR RPSSGDLLAS
101: SGDFLRLWEI NEDSSTVEPI SVLNNSKTSE FCAPLTSFDW NDVEPKRLGT CSIDTTCTIW DIEKSVVETQ LIAHDKEVHD IAWGEARVFA SVSADGSVRI
201: FDLRDKEHST IIYESPQPDT PLLRLAWNKQ DLRYMATILM DSNKVVILDI RSPTMPVAEL ERHQASVNAI AWAPQSCKHI CSGGDDTQAL IWELPTVAGP
301: NGIDPMSVYS AGSEINQLQW SSSQPDWIGI AFANKMQLLR V

Arabidopsis Description

TTG1Protein TRANSPARENT TESTA GLABRA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.