Factsheet for TraesCS4B01G397800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G409400.1
TraesCS2A01G409600.2
TraesCS2B01G428000.1
TraesCS2D01G406800.1
TraesCS2D01G406900.1
TraesCS2D01G575600.3
TraesCS3A01G046800.1
TraesCS3A01G257800.1
TraesCS3B01G036000.1
TraesCS3B01G290600.1
TraesCS3D01G033100.1
TraesCS3D01G257800.1
TraesCS4B01G397300.1
TraesCS4B01G397400.1
TraesCS4B01G397800.1
TraesCS4D01G224600.1
TraesCS5A01G489500.1
TraesCS5A01G558500.1
TraesCS6A01G259400.1
TraesCS6B01G286700.1
TraesCSU01G029400.1
TraesCSU01G116000.1
TraesCSU01G228400.1
TraesCSU01G237100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63650.1	TraesCS2A01G409400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2A01G409600.2	AT1G63650.1	12917293
AT1G63650.1	TraesCS2B01G428000.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G406800.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G406900.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS2D01G575600.3	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397300.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4B01G397800.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS4D01G224600.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS5A01G489500.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS5A01G558500.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G029400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G116000.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G228400.1	AT1G63650.1	12917293
AT1G63650.1	TraesCSU01G237100.1	AT1G63650.1	12917293
AT1G63650.1	TraesCS3A01G046800.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3B01G036000.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3D01G033100.1	AT1G71030.1	15361138
AT1G63650.1	TraesCS3A01G257800.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS3B01G290600.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS3D01G257800.1	AT3G13540.1	15361138
AT1G63650.1	TraesCS6A01G259400.1	AT5G24520.1	12917293
AT1G63650.1	TraesCS6B01G286700.1	AT5G24520.1	12917293

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G116000.1	Wheat	nucleus	69.61	77.85
TraesCS4B01G397400.1	Wheat	nucleus	63.33	57.27
TraesCS2B01G428000.1	Wheat	nucleus	58.04	51.66
TraesCS4B01G397300.1	Wheat	nucleus	38.63	48.4
Os04t0557200-01	Rice	cytosol, nucleus, peroxisome	46.08	42.04
OQU81560	Sorghum	nucleus	48.04	41.6
Zm00001d000236_P001	Maize	nucleus, plastid	44.9	41.11
OQU82120	Sorghum	nucleus	47.06	40.82
OQU82117	Sorghum	nucleus	46.67	40.34
Zm00001d026147_P002	Maize	nucleus	48.43	40.1
GSMUA_Achr11P...	Banana	nucleus	34.71	37.58
GSMUA_Achr8P11430_001	Banana	nucleus	36.86	34.43
GSMUA_Achr11P...	Banana	nucleus	36.08	33.33
OQU82119	Sorghum	nucleus	35.49	33.15
GSMUA_Achr11P...	Banana	nucleus	37.45	32.21
GSMUA_Achr5P20600_001	Banana	nucleus	34.31	29.76
VIT_02s0025g03450.t01	Wine grape	nucleus	36.27	29.46
KRH41187	Soybean	nucleus	34.12	27.62
VIT_15s0046g02560.t01	Wine grape	nucleus	35.1	27.16
Solyc08g081140.2.1	Tomato	nucleus	33.33	27.16
Bra027653.1-P	Field mustard	nucleus	31.37	26.85
KRH59908	Soybean	nucleus	33.14	26.78
CDX77694	Canola	nucleus	13.14	26.48
Bra027796.1-P	Field mustard	nucleus	31.37	26.4
AT1G63650.1	Thale cress	nucleus	30.78	26.34
AT5G41315.2	Thale cress	nucleus	31.37	24.81
Bra025508.1-P	Field mustard	nucleus	30.0	24.32
KRH65046	Soybean	nucleus	30.39	23.96
KRH48144	Soybean	nucleus	29.8	23.38
AT4G00480.2	Thale cress	nucleus	26.08	22.93
TraesCS1B01G112900.1	Wheat	nucleus	26.67	21.55
Bra000970.1-P	Field mustard	nucleus	26.86	20.95
TraesCS3B01G288700.1	Wheat	nucleus	17.65	20.32
TraesCS4B01G335200.1	Wheat	nucleus	9.61	19.92
TraesCS1B01G113100.4	Wheat	nucleus	26.86	19.91
PGSC0003DMT400032140	Potato	nucleus	13.73	19.44
TraesCS3B01G284800.1	Wheat	nucleus	17.65	18.95
Bra037343.1-P	Field mustard	cytosol	24.9	17.86
TraesCS1B01G208000.1	Wheat	nucleus	21.76	16.02
TraesCS4B01G234700.1	Wheat	nucleus	9.41	15.95
TraesCS2B01G469300.1	Wheat	nucleus	7.84	15.62
TraesCS4B01G276900.1	Wheat	nucleus	18.24	15.55
TraesCS3B01G185400.1	Wheat	nucleus	18.82	15.36
TraesCS2B01G469200.1	Wheat	nucleus	7.25	15.04
TraesCS4B01G345800.1	Wheat	nucleus	9.02	14.79
TraesCS5B01G307000.1	Wheat	nucleus	8.04	14.7
TraesCS5B01G307100.1	Wheat	nucleus	7.84	14.65
TraesCS4B01G391500.1	Wheat	nucleus	9.22	14.64
TraesCS5B01G306600.1	Wheat	nucleus	7.65	14.29
TraesCS5B01G306800.1	Wheat	nucleus	7.84	14.29
TraesCS7B01G483600.1	Wheat	nucleus	8.63	13.71
TraesCS1B01G387900.1	Wheat	nucleus	6.27	13.39
TraesCS5B01G518400.1	Wheat	nucleus	8.04	12.62
TraesCS4B01G021500.1	Wheat	nucleus	8.82	12.61
TraesCS4B01G308100.1	Wheat	nucleus	8.43	12.39
TraesCS4B01G056600.2	Wheat	nucleus	9.02	12.3
TraesCS5B01G518800.1	Wheat	nucleus	7.45	12.06
TraesCS4B01G020700.1	Wheat	nucleus	8.63	12.05
TraesCS4B01G021200.1	Wheat	nucleus	8.43	11.65
TraesCS4B01G020900.1	Wheat	nucleus	8.43	11.62
TraesCS4B01G308300.1	Wheat	nucleus	8.24	11.54
TraesCS4B01G308200.1	Wheat	nucleus	8.04	11.39
TraesCS5B01G013000.2	Wheat	nucleus	8.43	11.38
TraesCS4B01G021100.1	Wheat	nucleus	8.04	11.29
TraesCS5B01G518500.1	Wheat	nucleus	6.86	10.77
TraesCS3B01G029800.1	Wheat	nucleus	6.47	10.06

Protein Annotations

EnsemblPlants:TraesCS4B01G397800.1	EnsemblPlantsGene:TraesCS4B01G397800	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR11514	PANTHER:PTHR11514:SF94	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
SEG:seg	SMART:SM00353	SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:

Description

No Description!

Coordinates

chr4B:-:671764988..671776128

Molecular Weight (calculated)

57002.7 Da

IEP (calculated)

5.394

GRAVY (calculated)

-0.315

Length

510 amino acids

Sequence
(BLAST)

001: MAAPSGPGPG QEPPAGRQLS YHLAAAVRSI NWTYAIFWSI STGPAGVLAW KEGFYNGEIK TRKMTSSTTT TEPRSQQLRE LYESLLSGGN SDRRARLSPE
101: DLGDAEWYYT ISMSYTFRPG QGLPGKSFAS NQHVWVYNAQ SADTKTFERA LLAKTVPIKV STLLPSRFHH CICIDLSRTC VPFTSLISSW LAFFQTVVCI
201: PFMGGVLELG TSDPVLEDSN MVHQIGTSFW ELHLPSFPAC SKSEEPCSNP SLANETSEAG IMLEDLDHNA IEGMISELRE VECLSDVNLE CVTKEMDEFQ
301: FLLEGLDSCA LEDNWVMDRS FEFISSPQTV SSMDYPCTED VIVTLSSSVQ GTRPSCFIAW RRSLELKDMV VRVTDTEESQ KLLKKIVAGG AWTNNGDGGS
401: MARDRESNIK NHVISERRRR ERLNEMFMVL KSLVPSIHKV DKASILLQTI AYLKELEQRV KELESNRATI EWRLHDVVGG KKNVSVGSKR KALEREHNDG
501: QSNIVNVTEM

Best Arabidopsis Sequence Match ( AT1G63650.1 )
(BLAST)

001: MATGENRTVP DNLKKQLAVS VRNIQWSYGI FWSVSASQPG VLEWGDGYYN GDIKTRKTIQ AAEVKIDQLG LERSEQLREL YESLSLAESS ASGSSQVTRR
101: ASAAALSPED LTDTEWYYLV CMSFVFNIGE GIPGGALSNG EPIWLCNAET ADSKVFTRSL LAKSASLQTV VCFPFLGGVL EIGTTEHIKE DMNVIQSVKT
201: LFLEAPPYTT ISTRSDYQEI FDPLSDDKYT PVFITEAFPT TSTSGFEQEP EDHDSFINDG GASQVQSWQF VGEEISNCIH QSLNSSDCVS QTFVGTTGRL
301: ACDPRKSRIQ RLGQIQEQSN HVNMDDDVHY QGVISTIFKT THQLILGPQF QNFDKRSSFT RWKRSSSVKT LGEKSQKMIK KILFEVPLMN KKEELLPDTP
401: EETGNHALSE KKRREKLNER FMTLRSIIPS ISKIDKVSIL DDTIEYLQDL QKRVQELESC RESADTETRI TMMKRKKPDD EEERASANCM NSKRKGSDVN
501: VGEDEPADIG YAGLTDNLRI SSLGNEVVIE LRCAWREGIL LEIMDVISDL NLDSHSVQSS TGDGLLCLTV NCKHKGTKIA TTGMIQEALQ RVAWIC

Arabidopsis Description

BHLH2EGL3 [Source:UniProtKB/TrEMBL;Acc:A0A178W1W8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.