Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G397800.1 | Wheat | nucleus | 77.85 | 69.61 |
| TraesCSU01G029400.1 | Wheat | nucleus | 67.11 | 53.5 |
| Os04t0557200-01 | Rice | cytosol, nucleus, peroxisome | 53.07 | 43.29 |
| OQU81560 | Sorghum | nucleus | 55.04 | 42.61 |
| OQU82117 | Sorghum | nucleus | 54.39 | 42.03 |
| OQU82120 | Sorghum | nucleus | 53.95 | 41.84 |
| Zm00001d000236_P001 | Maize | nucleus, plastid | 51.1 | 41.83 |
| Zm00001d026147_P002 | Maize | nucleus | 55.48 | 41.07 |
| TraesCSU01G237100.1 | Wheat | nucleus | 32.46 | 40.33 |
| TraesCSU01G228400.1 | Wheat | nucleus | 32.46 | 40.33 |
| GSMUA_Achr11P... | Banana | nucleus | 38.16 | 36.94 |
| GSMUA_Achr8P11430_001 | Banana | nucleus | 41.67 | 34.8 |
| OQU82119 | Sorghum | nucleus | 38.16 | 31.87 |
| GSMUA_Achr11P... | Banana | nucleus | 41.23 | 31.7 |
| GSMUA_Achr11P... | Banana | nucleus | 38.16 | 31.52 |
| VIT_02s0025g03450.t01 | Wine grape | nucleus | 40.35 | 29.3 |
| GSMUA_Achr5P20600_001 | Banana | nucleus | 36.84 | 28.57 |
| Solyc08g081140.2.1 | Tomato | nucleus | 37.94 | 27.64 |
| Bra027653.1-P | Field mustard | nucleus | 35.09 | 26.85 |
| VIT_15s0046g02560.t01 | Wine grape | nucleus | 38.6 | 26.71 |
| AT1G63650.1 | Thale cress | nucleus | 34.87 | 26.68 |
| Bra027796.1-P | Field mustard | nucleus | 35.31 | 26.57 |
| KRH41187 | Soybean | nucleus | 36.4 | 26.35 |
| CDX77694 | Canola | nucleus | 14.47 | 26.09 |
| KRH59908 | Soybean | nucleus | 35.75 | 25.83 |
| AT5G41315.2 | Thale cress | nucleus | 34.87 | 24.65 |
| Bra025508.1-P | Field mustard | nucleus | 33.99 | 24.64 |
| KRH65046 | Soybean | nucleus | 33.99 | 23.96 |
| KRH48144 | Soybean | nucleus | 33.11 | 23.23 |
| AT4G00480.2 | Thale cress | nucleus | 29.39 | 23.1 |
| Bra000970.1-P | Field mustard | nucleus | 29.17 | 20.34 |
| Bra037343.1-P | Field mustard | cytosol | 28.29 | 18.14 |
| PGSC0003DMT400032140 | Potato | nucleus | 13.16 | 16.67 |
| TraesCSU01G222600.1 | Wheat | nucleus | 8.11 | 15.04 |
| TraesCSU01G075200.1 | Wheat | nucleus | 7.46 | 10.49 |
| TraesCSU01G075100.1 | Wheat | nucleus | 7.68 | 10.36 |
Protein Annotations
| EnsemblPlants:TraesCSU01G116000.1 | EnsemblPlantsGene:TraesCSU01G116000 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF94 | PFAM:PF00010 | PFAM:PF14215 | PFscan:PS50888 |
| SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | : |
Description
No Description!
Coordinates
chrUn:+:100234028..100241125
Molecular Weight (calculated)
50601.9 Da
IEP (calculated)
4.999
GRAVY (calculated)
-0.334
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSVSAAAP GQGQQEPPWG KQLRYQLAAA VRSINWTYAI FWSISTGPPP AGVLAWKDGF YNGEIKTRKI TSSTTEPTAD NLVLQTSEQL RELYESLLSG
101: GNSDRRARRP AASLSPEDLG DAEWYYTVSM SYTFRPGQGL PGKSFVSNQH VWLCNAQFAD TKTFQRALLA KAASIKTVVC IPFMGGVLEL GTSDPVLEDS
201: NMVHWISTSF WELHLASLPA CLESEEPSSN PSLAKRTGEA DIMFEDLNHN TIEGMISELR EVECFSDVDL ECITKEIDES HSLLEGLDMR ALEDNWILDG
301: SFEFMSSPQM VPAMDAPCTE DVNVTLSSSV EGTRPSCFIA WRRSTESKEA DARVTEESQK LLKKIVAGGA WTNNGRGGTM ARARETNIKA HVISERRRRE
401: RLNEMFLVLK SLVPSIHKVD KASILVETIA YLKELEQRVK ELESSGAPSP RLKERI
101: GNSDRRARRP AASLSPEDLG DAEWYYTVSM SYTFRPGQGL PGKSFVSNQH VWLCNAQFAD TKTFQRALLA KAASIKTVVC IPFMGGVLEL GTSDPVLEDS
201: NMVHWISTSF WELHLASLPA CLESEEPSSN PSLAKRTGEA DIMFEDLNHN TIEGMISELR EVECFSDVDL ECITKEIDES HSLLEGLDMR ALEDNWILDG
301: SFEFMSSPQM VPAMDAPCTE DVNVTLSSSV EGTRPSCFIA WRRSTESKEA DARVTEESQK LLKKIVAGGA WTNNGRGGTM ARARETNIKA HVISERRRRE
401: RLNEMFLVLK SLVPSIHKVD KASILVETIA YLKELEQRVK ELESSGAPSP RLKERI
001: MSLTMADGVE AAAGRSKRQN SLLRKQLALA VRSVQWSYAI FWSSSLTQPG VLEWGEGCYN GDMKKRKKSY ESHYKYGLQK SKELRKLYLS MLEGDSGTTV
101: STTHDNLNDD DDNCHSTSMM LSPDDLSDEE WYYLVSMSYV FSPSQCLPGR ASATGETIWL CNAQYAENKL FSRSLLARSA SIQTVVCFPY LGGVIELGVT
201: ELISEDHNLL RNIKSCLMEI SAHQDNDDEK KMEIKISEEK HQLPLGISDE DLHYKRTIST VLNYSADRSG KNDKNIRHRQ PNIVTSEPGS SFLRWKQCEQ
301: QVSGFVQKKK SQNVLRKILH DVPLMHTKRM FPSQNSGLNQ DDPSDRRKEN EKFSVLRTMV PTVNEVDKES ILNNTIKYLQ ELEARVEELE SCMGSVNFVE
401: RQRKTTENLN DSVLIEETSG NYDDSTKIDD NSGETEQVTV FRDKTHLRVK LKETEVVIEV RCSYRDYIVA DIMETLSNLH MDAFSVRSHT LNKFLTLNLK
501: AKFRGAAVAS VGMIKRELRR VIGDLF
101: STTHDNLNDD DDNCHSTSMM LSPDDLSDEE WYYLVSMSYV FSPSQCLPGR ASATGETIWL CNAQYAENKL FSRSLLARSA SIQTVVCFPY LGGVIELGVT
201: ELISEDHNLL RNIKSCLMEI SAHQDNDDEK KMEIKISEEK HQLPLGISDE DLHYKRTIST VLNYSADRSG KNDKNIRHRQ PNIVTSEPGS SFLRWKQCEQ
301: QVSGFVQKKK SQNVLRKILH DVPLMHTKRM FPSQNSGLNQ DDPSDRRKEN EKFSVLRTMV PTVNEVDKES ILNNTIKYLQ ELEARVEELE SCMGSVNFVE
401: RQRKTTENLN DSVLIEETSG NYDDSTKIDD NSGETEQVTV FRDKTHLRVK LKETEVVIEV RCSYRDYIVA DIMETLSNLH MDAFSVRSHT LNKFLTLNLK
501: AKFRGAAVAS VGMIKRELRR VIGDLF
Arabidopsis Description
ATMYC1Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JHC4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.