Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g081140.2.1 | Tomato | nucleus | 96.67 | 55.59 |
| CDY72121 | Canola | nucleus | 31.39 | 36.69 |
| Os01t0577300-00 | Rice | cytosol | 11.39 | 33.61 |
| VIT_02s0025g03450.t01 | Wine grape | nucleus | 53.89 | 30.89 |
| TraesCSU01G228400.1 | Wheat | nucleus | 25.28 | 24.8 |
| TraesCSU01G237100.1 | Wheat | nucleus | 25.28 | 24.8 |
| Os01t0576100-00 | Rice | nucleus | 20.0 | 22.93 |
| CDY25513 | Canola | nucleus | 36.67 | 22.88 |
| CDY34367 | Canola | nucleus | 37.22 | 22.48 |
| Bra025508.1-P | Field mustard | nucleus | 39.17 | 22.42 |
| AT1G63650.1 | Thale cress | nucleus | 36.94 | 22.32 |
| Bra027653.1-P | Field mustard | nucleus | 36.94 | 22.32 |
| AT5G41315.2 | Thale cress | nucleus | 38.33 | 21.4 |
| GSMUA_Achr5P20600_001 | Banana | nucleus | 34.72 | 21.26 |
| CDY08314 | Canola | nucleus | 35.56 | 21.16 |
| Bra027796.1-P | Field mustard | nucleus | 35.56 | 21.12 |
| CDY39747 | Canola | nucleus | 32.78 | 21.11 |
| CDY58950 | Canola | nucleus | 32.78 | 20.45 |
| TraesCS4B01G397300.1 | Wheat | nucleus | 22.78 | 20.15 |
| GSMUA_Achr8P11430_001 | Banana | nucleus | 29.17 | 19.23 |
| GSMUA_Achr11P... | Banana | nucleus | 25.0 | 19.11 |
| GSMUA_Achr11P... | Banana | nucleus | 29.17 | 19.02 |
| GSMUA_Achr11P... | Banana | nucleus | 31.11 | 18.89 |
| OQU82119 | Sorghum | nucleus | 25.56 | 16.85 |
| TraesCS2D01G406900.1 | Wheat | nucleus | 26.39 | 16.75 |
| Os11t0258700-00 | Rice | mitochondrion | 22.22 | 16.56 |
| TraesCS2A01G409600.2 | Wheat | nucleus, plastid | 25.28 | 16.31 |
| TraesCSU01G029400.1 | Wheat | nucleus | 25.83 | 16.26 |
| HORVU2Hr1G096810.5 | Barley | nucleus | 25.28 | 16.22 |
| TraesCS2B01G428000.1 | Wheat | nucleus | 25.28 | 15.88 |
| TraesCS4D01G224600.1 | Wheat | nucleus | 24.44 | 15.8 |
| Zm00001d000236_P001 | Maize | nucleus, plastid | 24.44 | 15.8 |
| TraesCS4B01G397400.1 | Wheat | nucleus | 24.72 | 15.78 |
| TraesCS2A01G409400.1 | Wheat | nucleus | 24.72 | 15.67 |
| Os04t0557200-01 | Rice | cytosol, nucleus, peroxisome | 24.17 | 15.56 |
| Os04t0557800-00 | Rice | mitochondrion | 24.17 | 15.16 |
| TraesCS5A01G489500.1 | Wheat | nucleus | 23.89 | 15.09 |
| Zm00001d026147_P002 | Maize | nucleus | 25.56 | 14.94 |
| TraesCS5A01G558500.1 | Wheat | nucleus | 23.89 | 14.7 |
| OQU82120 | Sorghum | nucleus | 23.61 | 14.46 |
| TraesCS2D01G575600.3 | Wheat | nucleus, plastid | 23.61 | 14.43 |
| OQU82117 | Sorghum | nucleus | 23.61 | 14.41 |
| PGSC0003DMT400033757 | Potato | nucleus | 8.33 | 14.29 |
| OQU81560 | Sorghum | nucleus | 23.33 | 14.26 |
| PGSC0003DMT400033569 | Potato | nucleus | 23.33 | 14.24 |
| TraesCS4B01G397800.1 | Wheat | nucleus | 19.44 | 13.73 |
| PGSC0003DMT400078698 | Potato | nucleus | 7.78 | 13.4 |
| TraesCS2D01G406800.1 | Wheat | plastid | 17.22 | 13.33 |
| PGSC0003DMT400078696 | Potato | nucleus | 12.78 | 13.26 |
| TraesCSU01G116000.1 | Wheat | nucleus | 16.67 | 13.16 |
| PGSC0003DMT400013074 | Potato | nucleus | 12.78 | 13.03 |
| PGSC0003DMT400078699 | Potato | nucleus | 11.67 | 13.0 |
| PGSC0003DMT400014097 | Potato | nucleus | 14.44 | 11.38 |
| PGSC0003DMT400047220 | Potato | nucleus | 14.17 | 11.28 |
| PGSC0003DMT400031899 | Potato | plastid | 13.06 | 10.9 |
| PGSC0003DMT400014089 | Potato | nucleus | 11.39 | 10.68 |
| PGSC0003DMT400028057 | Potato | nucleus | 11.11 | 10.28 |
| PGSC0003DMT400015017 | Potato | nucleus | 12.5 | 9.87 |
| PGSC0003DMT400002963 | Potato | nucleus | 16.39 | 9.87 |
| PGSC0003DMT400051672 | Potato | nucleus | 13.06 | 9.85 |
| PGSC0003DMT400018046 | Potato | extracellular, nucleus | 14.44 | 9.0 |
| PGSC0003DMT400000652 | Potato | nucleus | 14.72 | 8.86 |
| PGSC0003DMT400045204 | Potato | nucleus | 16.94 | 8.79 |
| Os04t0557500-00 | Rice | mitochondrion, plasma membrane | 1.11 | 2.22 |
| PGSC0003DMT400028052 | Potato | nucleus | 0.0 | 0.0 |
| PGSC0003DMT400028054 | Potato | cytosol | 0.0 | 0.0 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400032140 | EnsemblPlantsGene:PGSC0003DMG401012339 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF28 | PFAM:PF00010 | PFscan:PS50888 | PGSC:PGSC0003DMG401012339 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000295A854 | UniProt:M1AWY5 | MapMan:15.5.32 | : | : |
Description
BHLH transcription factor JAF13 [Source:PGSC_GENE;Acc:PGSC0003DMG401012339]
Coordinates
chr8:+:54833821..54838836
Molecular Weight (calculated)
40671.4 Da
IEP (calculated)
7.265
GRAVY (calculated)
-0.664
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVDGIGETS QAQSWRFMDD NMSNGANNSL NSSDCISQNN ANCEKLSPLS SGEKETKPCP LDHQENDQKK PHLLDHQRDD AQYQAVLSTL LKSSDQLTLG
101: PHFSNMNKKS SFAGWKTDIQ MPRFGTAQKL LKKVLLEVPR MHAGVIHKFS RENGKKNSLW RPEVDDIDRN HVISERRRRE KINERFMHLA SMLPTSSKVD
201: KISLLDETIE YMKELERRVQ ELEARSARRS NDTAEQTSDN CGTSKFNDIR GSLLNKRKAC DMDEMEPESC NGLLKRSSAD SIVINMIDKE VSIKMSCLWS
301: ESLLLKIMEA LTDLHMDCHT VQSSNIDGIL SIAIESKSTG SKTVAVGTIR EALQRVVWKS
101: PHFSNMNKKS SFAGWKTDIQ MPRFGTAQKL LKKVLLEVPR MHAGVIHKFS RENGKKNSLW RPEVDDIDRN HVISERRRRE KINERFMHLA SMLPTSSKVD
201: KISLLDETIE YMKELERRVQ ELEARSARRS NDTAEQTSDN CGTSKFNDIR GSLLNKRKAC DMDEMEPESC NGLLKRSSAD SIVINMIDKE VSIKMSCLWS
301: ESLLLKIMEA LTDLHMDCHT VQSSNIDGIL SIAIESKSTG SKTVAVGTIR EALQRVVWKS
001: MGYRDEETMA TGQNRTTVPE NLKKHLAVSV RNIQWSYGIF WSVSASQSGV LEWGDGYYNG DIKTRKTIQA SEIKADQLGL RRSEQLSELY ESLSVAESSS
101: SGVAAGSQVT RRASAAALSP EDLADTEWYY LVCMSFVFNI GEGMPGRTFA NGEPIWLCNA HTADSKVFSR SLLAKSAAVK TVVCFPFLGG VVEIGTTEHI
201: TEDMNVIQCV KTSFLEAPDP YATILPARSD YHIDNVLDPQ QILGDEIYAP MFSTEPFPTA SPSRTTNGFD QEHEQVADDH DSFMTERITG GASQVQSWQL
301: MDDELSNCVH QSLNSSDCVS QTFVEGAAGR VAYGARKSRV QRLGQIQEQQ RNVKTLSFDP RNDDVHYQSV ISTIFKTNHQ LILGPQFRNC DKQSSFTRWK
401: KSSSSSSGTA TVTAPSQGML KKIIFDVPRV HQKEKLMLDS PEARDETGNH AVLEKKRREK LNERFMTLRK IIPSINKIDK VSILDDTIEY LQELERRVQE
501: LESCRESTDT ETRGTMTMKR KKPCDAGERT SANCANNETG NGKKVSVNNV GEAEPADTGF TGLTDNLRIG SFGNEVVIEL RCAWREGVLL EIMDVISDLH
601: LDSHSVQSST GDGLLCLTVN CKHKGSKIAT PGMIKEALQR VAWIC
101: SGVAAGSQVT RRASAAALSP EDLADTEWYY LVCMSFVFNI GEGMPGRTFA NGEPIWLCNA HTADSKVFSR SLLAKSAAVK TVVCFPFLGG VVEIGTTEHI
201: TEDMNVIQCV KTSFLEAPDP YATILPARSD YHIDNVLDPQ QILGDEIYAP MFSTEPFPTA SPSRTTNGFD QEHEQVADDH DSFMTERITG GASQVQSWQL
301: MDDELSNCVH QSLNSSDCVS QTFVEGAAGR VAYGARKSRV QRLGQIQEQQ RNVKTLSFDP RNDDVHYQSV ISTIFKTNHQ LILGPQFRNC DKQSSFTRWK
401: KSSSSSSGTA TVTAPSQGML KKIIFDVPRV HQKEKLMLDS PEARDETGNH AVLEKKRREK LNERFMTLRK IIPSINKIDK VSILDDTIEY LQELERRVQE
501: LESCRESTDT ETRGTMTMKR KKPCDAGERT SANCANNETG NGKKVSVNNV GEAEPADTGF TGLTDNLRIG SFGNEVVIEL RCAWREGVLL EIMDVISDLH
601: LDSHSVQSST GDGLLCLTVN CKHKGSKIAT PGMIKEALQR VAWIC
Arabidopsis Description
GL3Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1R7T3F7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.