Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g091800.2.1 | Tomato | nucleus | 87.03 | 87.03 |
| KRH58187 | Soybean | endoplasmic reticulum | 31.41 | 32.44 |
| PGSC0003DMT400013074 | Potato | nucleus | 31.99 | 31.44 |
| KRH77193 | Soybean | nucleus | 29.11 | 30.79 |
| KRH04347 | Soybean | nucleus | 29.68 | 30.21 |
| PGSC0003DMT400033757 | Potato | nucleus | 17.29 | 28.57 |
| PGSC0003DMT400078698 | Potato | nucleus | 17.0 | 28.23 |
| PGSC0003DMT400078699 | Potato | nucleus | 25.94 | 27.86 |
| PGSC0003DMT400014089 | Potato | nucleus | 16.71 | 15.1 |
| PGSC0003DMT400028057 | Potato | nucleus | 16.43 | 14.65 |
| PGSC0003DMT400031899 | Potato | plastid | 16.14 | 12.99 |
| PGSC0003DMT400015017 | Potato | nucleus | 17.0 | 12.94 |
| PGSC0003DMT400032140 | Potato | nucleus | 13.26 | 12.78 |
| PGSC0003DMT400014097 | Potato | nucleus | 15.27 | 11.6 |
| PGSC0003DMT400047220 | Potato | nucleus | 14.41 | 11.06 |
| PGSC0003DMT400002963 | Potato | nucleus | 16.71 | 9.7 |
| PGSC0003DMT400051672 | Potato | nucleus | 12.39 | 9.01 |
| PGSC0003DMT400045204 | Potato | nucleus | 17.58 | 8.79 |
| PGSC0003DMT400033569 | Potato | nucleus | 14.12 | 8.31 |
| PGSC0003DMT400018046 | Potato | extracellular, nucleus | 13.54 | 8.13 |
| PGSC0003DMT400000652 | Potato | nucleus | 13.26 | 7.69 |
| PGSC0003DMT400028054 | Potato | cytosol | 3.46 | 6.09 |
| PGSC0003DMT400028052 | Potato | nucleus | 3.46 | 5.91 |
Protein Annotations
| EntrezGene:102584980 | MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| UniProt:M1D0K1 | PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG402030621 | PGSC:PGSC0003DMG402030621 | EnsemblPlants:PGSC0003DMT400078696 | PFscan:PS50888 |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF100 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00029615C0 | RefSeq:XP_006357746.1 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG402030621]
Coordinates
chr2:+:42129401..42131905
Molecular Weight (calculated)
39531.9 Da
IEP (calculated)
6.851
GRAVY (calculated)
-0.612
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNSSLSQWF SRTEEGVFNS NKNTSIDDFT TQKSTISEDQ ETSELSITPD STRANSRSYF HQEISKSKSK ITPMENFPIG SKRPAIDDDH QPKLNKISSS
101: SHRFLSFNNN MDSVFPSHQG CKIEAVDEMY LCDSSDQMFF PYVKSNGCYD VKDKEGGKRI PSVELQHHII AERKRREKLS QRFVALSAIL PSLKKVDKAS
201: ILEQAIKHVK ELKEKVQLLE EEKKSGPSQQ NSVMFVNKSK LEIEEYSSSE ENNNNIGSDL RVDIEVRYSD NNVLIRITCA RSNAFVLNIH NEIEKLHLTI
301: LQSCMMPFGK QAIDITLVAQ MDESFCMTLK DVAKHVRMVT GRLMTQA
101: SHRFLSFNNN MDSVFPSHQG CKIEAVDEMY LCDSSDQMFF PYVKSNGCYD VKDKEGGKRI PSVELQHHII AERKRREKLS QRFVALSAIL PSLKKVDKAS
201: ILEQAIKHVK ELKEKVQLLE EEKKSGPSQQ NSVMFVNKSK LEIEEYSSSE ENNNNIGSDL RVDIEVRYSD NNVLIRITCA RSNAFVLNIH NEIEKLHLTI
301: LQSCMMPFGK QAIDITLVAQ MDESFCMTLK DVAKHVRMVT GRLMTQA
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.