Factsheet for PGSC0003DMT400047220

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096370.2.1	Tomato	nucleus	93.14	93.56
PGSC0003DMT400014097	Potato	nucleus	54.2	53.61
PGSC0003DMT400014089	Potato	nucleus	44.47	52.34
PGSC0003DMT400028057	Potato	nucleus	44.03	51.16
KRH47834	Soybean	nucleus	48.45	47.2
KRH06400	Soybean	nucleus	48.23	46.78
PGSC0003DMT400028054	Potato	cytosol	19.25	44.16
PGSC0003DMT400028052	Potato	nucleus	19.25	42.86
PGSC0003DMT400031899	Potato	plastid	38.05	39.91
PGSC0003DMT400015017	Potato	nucleus	38.72	38.38
TraesCS5B01G306600.1	Wheat	nucleus	21.9	36.26
TraesCS2A01G448500.1	Wheat	nucleus	20.35	35.94
TraesCS5D01G313400.1	Wheat	nucleus	21.68	35.9
TraesCS1A01G369200.1	Wheat	nucleus	15.71	35.86
TraesCS5D01G313600.1	Wheat	nucleus	22.12	35.84
HORVU5Hr1G080040.1	Barley	nucleus	21.24	35.82
TraesCSU01G222600.1	Wheat	nucleus	19.47	35.77
TraesCS2B01G469200.1	Wheat	nucleus	19.47	35.77
TraesCS5B01G307100.1	Wheat	nucleus	21.46	35.53
TraesCS5A01G306200.1	Wheat	nucleus	21.9	35.48
TraesCS5D01G313500.1	Wheat	nucleus	21.9	35.48
TraesCS2B01G469300.1	Wheat	nucleus	19.91	35.16
TraesCS5B01G307000.1	Wheat	nucleus	21.68	35.13
Zm00001d031717_P001	Maize	nucleus	19.69	35.04
TraesCS5A01G306700.1	Wheat	peroxisome	21.24	35.04
TraesCS1D01G374800.1	Wheat	nucleus	20.35	34.72
TraesCS5B01G306800.1	Wheat	nucleus	21.46	34.64
TraesCS5D01G313700.1	Wheat	nucleus	21.02	34.55
TraesCS5A01G306500.1	Wheat	nucleus	21.46	34.52
TraesCS5A01G306600.1	Wheat	nucleus	20.8	34.18
Os09t0519100-00	Rice	nucleus	19.91	34.09
Zm00001d006150_P001	Maize	nucleus	21.9	34.02
EER99201	Sorghum	nucleus	22.12	33.78
TraesCS7D01G102200.1	Wheat	nucleus	19.03	33.59
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	12.17	33.54
TraesCS1B01G387900.1	Wheat	nucleus	17.7	33.47
OQU75588	Sorghum	nucleus	19.47	33.46
OQU80776	Sorghum	nucleus	19.47	33.46
Zm00001d021164_P001	Maize	nucleus	21.24	33.1
EER97058	Sorghum	cytosol, nucleus, plastid	20.13	32.97
Zm00001d052728_P001	Maize	nucleus	19.91	32.73
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	19.03	32.7
HORVU5Hr1G080080.1	Barley	nucleus, plastid	15.04	32.38
OQU80778	Sorghum	nucleus	19.03	31.85
TraesCS5A01G306400.1	Wheat	nucleus	15.71	31.84
KXG25462	Sorghum	nucleus	19.25	31.3
HORVU5Hr1G079900.1	Barley	cytosol	18.36	30.74
OQU86344	Sorghum	nucleus	17.26	30.47
OQU80777	Sorghum	nucleus	18.81	30.36
PGSC0003DMT400002963	Potato	nucleus	37.83	28.6
OQU80775	Sorghum	cytosol, nucleus, peroxisome, plastid	16.81	27.24
PGSC0003DMT400045204	Potato	nucleus	38.72	25.22
PGSC0003DMT400051672	Potato	nucleus	26.33	24.95
HORVU1Hr1G050560.1	Barley	nucleus	36.95	24.42
TraesCS1B01G208000.1	Wheat	nucleus	36.95	24.1
TraesCS1D01G196900.1	Wheat	nucleus	36.95	24.03
Os10t0575000-01	Rice	nucleus	36.06	23.32
KXG39194	Sorghum	nucleus	36.28	23.2
Zm00001d047017_P001	Maize	nucleus	36.06	23.19
Zm00001d030028_P001	Maize	nucleus	35.84	22.98
TraesCS1A01G193200.1	Wheat	nucleus	35.18	22.94
PGSC0003DMT400000652	Potato	nucleus	29.42	22.24
PGSC0003DMT400018046	Potato	extracellular, nucleus	28.32	22.15
PGSC0003DMT400033757	Potato	nucleus	8.85	19.05
PGSC0003DMT400078698	Potato	nucleus	8.63	18.66
PGSC0003DMT400013074	Potato	nucleus	13.05	16.71
PGSC0003DMT400033569	Potato	nucleus	19.91	15.25
PGSC0003DMT400078699	Potato	nucleus	10.62	14.86
PGSC0003DMT400078696	Potato	nucleus	11.06	14.41
PGSC0003DMT400032140	Potato	nucleus	11.28	14.17

Protein Annotations

EntrezGene:102590233	MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1BKB3
InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	EnsemblPlantsGene:PGSC0003DMG400018332	PGSC:PGSC0003DMG400018332	EnsemblPlants:PGSC0003DMT400047220
PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF40	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00029565CA
RefSeq:XP_006357552.1	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018332]

Coordinates

chr1:+:74024336..74026082

Molecular Weight (calculated)

49970.1 Da

IEP (calculated)

5.803

GRAVY (calculated)

-0.396

Length

452 amino acids

Sequence
(BLAST)

001: MEQLLVSSSP MAAASLPPPP VDVNQVPLDL QQMLQYVVKS QPEWWAYAIF WQTSTDDDGK NFLAWGDGYF QGDGVVNNNK GSSSSSSSLK SQAQSERKKV
101: IKGIQALMDG NGDTDLVDDG DVTDTEWFYV MSLARSFSAG DGSVTGKAFG SDDFLWITGP AQFQLHYSCE RAKEAQIHGI QTLVCIPTSN GVFELGSTQL
201: IKQNLSLVQQ VKSLFLCCPP IQFLEKSICF ADIGLVTGLQ QDDNDDKLRE NSKKQPQPVV AKKKRGRKPK EDANMAALNH VEAERQRREK LNHRFYALRS
301: VVPNVSRMDK ASLLSDAVSY INQLKAKVDE LELQLIDHTK KPKNVTESSS ADNQSTTTSS DDQVIKANST AAPEVEVKII GTDAMIRVQS ENVDYPSAKL
401: MIALQNLQMQ VHHASISSVN HLVLHDVVVR VPQGLSTEDE LRTALLTRLE HH

Best Arabidopsis Sequence Match ( AT4G00870.1 )
(BLAST)

001: MYNLTFSPSL SSSLLSFTQQ TPAAIVSSSP PDLVLQQKLR FVVETSPDRW AYVIFWQKMF DDQSDRSYLV WVDGHFCGNK NNNSQENYTT NSIECELMMD
101: GGDDLELFYA ASFYGEDRSP RKEVSDESLV WLTGPDELRF SNYERAKEAG FHGVHTLVSI PINNGIIELG SSESIIQNRN FINRVKSIFG SGKTTKHTNQ
201: TGSYPKPAVS DHSKSGNQQF GSERKRRRKL ETTRVAAATK EKHHPAVLSH VEAEKQRREK LNHRFYALRA IVPKVSRMDK ASLLSDAVSY IESLKSKIDD
301: LETEIKKMKM TETDKLDNSS SNTSPSSVEY QVNQKPSKSN RGSDLEVQVK IVGEEAIIRV QTENVNHPTS ALMSALMEMD CRVQHANASR LSQVMVQDVV
401: VLVPEGLRSE DRLRTTLVRT LSL

Arabidopsis Description

BHLH14Transcription factor bHLH14 [Source:UniProtKB/Swiss-Prot;Acc:O23090]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.