Factsheet for PGSC0003DMT400002963

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002985
PGSC0003DMT400002991
PGSC0003DMT400007592
PGSC0003DMT400022650
PGSC0003DMT400022651
PGSC0003DMT400036790
PGSC0003DMT400074101
PGSC0003DMT400075155

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	PGSC0003DMT400007592	AT1G19180.1	18547396
AT1G32640.1	PGSC0003DMT400075155	AT1G19180.1	18547396
AT1G32640.1	PGSC0003DMT400002985	AT1G30135.1	19309455
AT1G32640.1	PGSC0003DMT400002991	AT1G30135.1	19309455
AT1G32640.1	PGSC0003DMT400022650	AT1G30135.1	19309455
AT1G32640.1	PGSC0003DMT400022651	AT1G30135.1	19309455
AT1G32640.1	PGSC0003DMT400036790	AT1G48500.1	19309455
AT1G32640.1	PGSC0003DMT400074101	AT1G48500.1	19309455
AT1G32640.1	PGSC0003DMT400036790	AT3G17860.1	17637675
AT1G32640.1	PGSC0003DMT400074101	AT3G17860.1	17637675

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g005050.2.1	Tomato	nucleus	64.38	82.97
Bra017527.1-P	Field mustard	nucleus	25.08	66.37
PGSC0003DMT400045204	Potato	nucleus	74.92	64.55
VIT_02s0012g01320.t01	Wine grape	nucleus	68.39	61.69
Bra013263.1-P	Field mustard	nucleus	27.59	60.89
CDX77688	Canola	nucleus	44.48	58.85
CDY58502	Canola	nucleus	44.15	58.8
KRH74418	Soybean	nucleus	59.53	55.45
CDY03195	Canola	nucleus	50.33	55.23
KRH75613	Soybean	nucleus	58.7	55.1
Bra010178.1-P	Field mustard	nucleus	54.85	54.67
CDX73261	Canola	nucleus	40.13	54.18
CDY26910	Canola	nucleus	40.13	54.18
KRH45440	Soybean	nucleus	58.53	53.52
CDY35179	Canola	nucleus	50.17	53.38
CDX84081	Canola	nucleus	47.16	53.31
AT4G17880.1	Thale cress	nucleus	52.01	52.8
Bra024998.1-P	Field mustard	nucleus	51.0	52.59
AT1G32640.1	Thale cress	nucleus	54.68	52.49
CDX78808	Canola	nucleus	50.33	51.99
AT5G46760.1	Thale cress	nucleus	50.67	51.18
CDY44507	Canola	nucleus	50.0	51.02
KRH39540	Soybean	nucleus	60.7	49.66
HORVU1Hr1G050560.1	Barley	nucleus	52.68	46.05
CDY03185	Canola	nucleus	35.95	45.45
TraesCS1B01G208000.1	Wheat	nucleus	52.51	45.31
Os10t0575000-01	Rice	nucleus	52.84	45.21
TraesCS1D01G196900.1	Wheat	nucleus	52.34	45.04
CDX77696	Canola	nucleus	9.03	45.0
Bra017520.1-P	Field mustard	nucleus	37.46	44.98
CDY59973	Canola	nucleus	38.13	44.79
Bra013264.1-P	Field mustard	nucleus	22.07	44.44
Zm00001d030028_P001	Maize	nucleus	52.34	44.4
TraesCS1A01G193200.1	Wheat	nucleus	51.34	44.3
CDY03183	Canola	nucleus	37.46	44.01
Zm00001d047017_P001	Maize	nucleus	51.67	43.95
AT5G46830.1	Thale cress	nucleus	37.46	43.84
CDY35183	Canola	nucleus	37.12	43.79
Bra017523.1-P	Field mustard	nucleus	36.96	43.59
KXG39194	Sorghum	nucleus	51.51	43.56
Bra024992.1-P	Field mustard	nucleus	18.73	41.33
Bra024993.1-P	Field mustard	nucleus	25.92	41.11
CDX77699	Canola	nucleus	18.56	40.96
CDY33482	Canola	nucleus	18.56	40.96
PGSC0003DMT400014097	Potato	nucleus	30.77	40.26
PGSC0003DMT400014089	Potato	nucleus	24.41	38.02
PGSC0003DMT400047220	Potato	nucleus	28.6	37.83
PGSC0003DMT400028057	Potato	nucleus	24.08	37.02
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	9.87	35.98
Zm00001d031717_P001	Maize	nucleus	14.88	35.04
TraesCS5D01G313500.1	Wheat	nucleus	16.05	34.41
TraesCS5A01G306500.1	Wheat	nucleus	16.05	34.16
TraesCS5A01G306200.1	Wheat	nucleus	15.89	34.05
TraesCS5B01G307000.1	Wheat	nucleus	15.89	34.05
TraesCS5D01G313600.1	Wheat	nucleus	15.89	34.05
PGSC0003DMT400031899	Potato	plastid	24.25	33.64
Zm00001d052728_P001	Maize	nucleus	15.38	33.45
OQU86344	Sorghum	nucleus	14.21	33.2
PGSC0003DMT400015017	Potato	nucleus	25.25	33.11
TraesCS5B01G306800.1	Wheat	nucleus	15.38	32.86
TraesCS5A01G306400.1	Wheat	nucleus	12.21	32.74
OQU75588	Sorghum	nucleus	14.38	32.7
OQU80776	Sorghum	nucleus	14.38	32.7
TraesCS2B01G469200.1	Wheat	nucleus	13.38	32.52
TraesCSU01G222600.1	Wheat	nucleus	13.38	32.52
HORVU5Hr1G080040.1	Barley	nucleus	14.55	32.46
TraesCS2A01G448500.1	Wheat	nucleus	13.71	32.03
TraesCS2B01G469300.1	Wheat	nucleus	13.71	32.03
KXG25462	Sorghum	nucleus	14.88	32.01
HORVU5Hr1G080080.1	Barley	nucleus, plastid	11.2	31.9
TraesCS5A01G306700.1	Wheat	peroxisome	14.55	31.75
TraesCS1D01G374800.1	Wheat	nucleus	14.05	31.7
TraesCS5D01G313700.1	Wheat	nucleus	14.55	31.64
OQU80778	Sorghum	nucleus	14.21	31.48
PGSC0003DMT400028054	Potato	cytosol	10.37	31.47
TraesCS1A01G369200.1	Wheat	nucleus	10.37	31.31
TraesCS5B01G306600.1	Wheat	nucleus	14.21	31.14
TraesCS5D01G313400.1	Wheat	nucleus	14.21	31.14
HORVU5Hr1G079900.1	Barley	cytosol	14.05	31.11
TraesCS5A01G306600.1	Wheat	nucleus	14.21	30.91
TraesCS5B01G307100.1	Wheat	nucleus	14.05	30.77
PGSC0003DMT400051672	Potato	nucleus	24.41	30.61
Zm00001d006150_P001	Maize	nucleus	14.88	30.58
PGSC0003DMT400028052	Potato	nucleus	10.37	30.54
TraesCS7D01G102200.1	Wheat	nucleus	13.04	30.47
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	13.38	30.42
EER99201	Sorghum	nucleus	15.05	30.41
Os09t0519100-00	Rice	nucleus	13.38	30.3
OQU80775	Sorghum	cytosol, nucleus, peroxisome, plastid	14.05	30.11
EER97058	Sorghum	cytosol, nucleus, plastid	13.88	30.07
TraesCS1B01G387900.1	Wheat	nucleus	11.87	29.71
OQU80777	Sorghum	nucleus	13.88	29.64
PGSC0003DMT400000652	Potato	nucleus	29.6	29.6
PGSC0003DMT400018046	Potato	extracellular, nucleus	28.43	29.41
Zm00001d021164_P001	Maize	nucleus	14.21	29.31
PGSC0003DMT400033757	Potato	nucleus	7.69	21.9
PGSC0003DMT400078698	Potato	nucleus	7.36	21.05
PGSC0003DMT400013074	Potato	nucleus	11.2	18.98
PGSC0003DMT400033569	Potato	nucleus	17.89	18.14
PGSC0003DMT400078699	Potato	nucleus	9.7	17.96
PGSC0003DMT400078696	Potato	nucleus	9.7	16.71
PGSC0003DMT400032140	Potato	nucleus	9.87	16.39

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:AJ630506	ProteinID:CAF74711	ProteinID:CAF74711.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M0ZKY6	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	EnsemblPlantsGene:PGSC0003DMG400001161
PGSC:PGSC0003DMG400001161	EnsemblPlants:PGSC0003DMT400002963	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF43	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002963B41	InterPro:bHLH_dom	SEG:seg	:	:

Description

MYC transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400001161]

Coordinates

chr8:+:4433921..4436126

Molecular Weight (calculated)

65262.2 Da

IEP (calculated)

6.159

GRAVY (calculated)

-0.566

Length

598 amino acids

Sequence
(BLAST)

001: MPFFNQESLQ QRLQALIDGA RESWAYAIFW QSSSTSDFAT PSVLGWGDGY YKGEENKNKR RASSSSANFV AEQEHRKKVL RELNSLISGV QAAGAGSGGD
101: DAVDEEVTDT EWFFLISMTQ SFANGNGLPG LAMYSSSPIW VTGTEKLAGS QCERARQAQG FGLQTIVCIP SANGVVELGS TELIFESSDL MNKVKYLFNF
201: NIDMGSVTGS GSGSCAVHPE TDPSALWLTD PSSSVVEAKD SLINSSSRDV QLVFVNENSE NGTQNQQHSQ QTQGFFTKEL NFSGYGFDGS STRNKNGNSS
301: ISCKPETREI LNFGDSSKRS GSLFSGQSQF GPGTGLGLME ENKNKNNNNN KKRSLASRGN NEEGMLSFVS GVILPTSTMG KSGGGGDSDH SDLEASVVKE
401: AIVEPEKKPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN VSKMDKASLL GDAIAYINEL KSKVQNSDLD KEELRSQIES LRKELANKGS
501: SNYSSSPPSN QDLKIVDMDI DVKVIGWDAM IRIQCSKKNH PAARLMAALK DLDLDVHHAS VSVVNDLMIQ QATVKMGSRL YAQEQLTIAL TSKFAESR

Best Arabidopsis Sequence Match ( AT1G32640.1 )
(BLAST)

001: MTDYRLQPTM NLWTTDDNAS MMEAFMSSSD ISTLWPPAST TTTTATTETT PTPAMEIPAQ AGFNQETLQQ RLQALIEGTH EGWTYAIFWQ PSYDFSGASV
101: LGWGDGYYKG EEDKANPRRR SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA GLAGKAFATG NAVWVSGSDQ
201: LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS
301: SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV
401: LNEDKVLSFG DKTAGESDHS DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKSK
501: VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA
601: TVKMGFRIYT QEQLRASLIS KIG

Arabidopsis Description

MYC2ZBF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7C3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.