CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02523
KRH11175
KRH12644
KRH19420
KRH21078
KRH37606
KRH39044
KRH42552
KRH58647

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	KRH11175	AT1G30135.1	19309455
AT1G32640.1	KRH21078	AT1G30135.1	19309455
AT1G32640.1	KRH42552	AT1G30135.1	19309455
AT1G32640.1	KRH58647	AT1G30135.1	19309455
AT1G32640.1	KRH39044	AT1G48500.1	19309455
AT1G32640.1	KRH39044	AT3G17860.1	17637675
AT1G32640.1	KRH02523	AT3G43440.1	19309455
AT1G32640.1	KRH12644	AT3G43440.1	19309455
AT1G32640.1	KRH19420	AT3G43440.1	19309455
AT1G32640.1	KRH37606	AT3G43440.1	19309455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45440	Soybean	nucleus	90.89	88.53
Bra017527.1-P	Field mustard	nucleus	23.55	66.37
VIT_02s0012g01320.t01	Wine grape	nucleus	67.35	64.71
KRH74418	Soybean	nucleus	65.15	64.64
KRH05127	Soybean	nucleus, plastid	28.73	62.46
Solyc08g005050.2.1	Tomato	nucleus	45.37	62.28
CDX77688	Canola	nucleus	43.8	61.73
CDY58502	Canola	nucleus	43.49	61.69
CDX73261	Canola	nucleus	42.86	61.63
CDY26910	Canola	nucleus	42.7	61.4
Bra013263.1-P	Field mustard	nucleus	25.27	59.41
KRH39540	Soybean	nucleus	67.82	59.1
Bra010178.1-P	Field mustard	nucleus	55.57	59.0
PGSC0003DMT400002963	Potato	nucleus	55.1	58.7
CDY03195	Canola	nucleus	49.92	58.35
Solyc08g076930.1.1	Tomato	nucleus	62.17	57.47
AT1G32640.1	Thale cress	nucleus	56.04	57.3
CDX84081	Canola	nucleus	47.41	57.09
PGSC0003DMT400045204	Potato	nucleus	61.85	56.77
AT4G17880.1	Thale cress	nucleus	52.43	56.71
CDY35179	Canola	nucleus	49.76	56.41
CDX78808	Canola	nucleus	49.61	54.58
Bra024998.1-P	Field mustard	nucleus	49.45	54.31
CDY44507	Canola	nucleus	49.92	54.27
AT5G46760.1	Thale cress	nucleus	50.08	53.89
Bra013264.1-P	Field mustard	nucleus	23.7	50.84
CDY03185	Canola	nucleus	36.89	49.68
HORVU1Hr1G050560.1	Barley	nucleus	52.12	48.54
Zm00001d030028_P001	Maize	nucleus	53.22	48.09
Os10t0575000-01	Rice	nucleus	52.59	47.93
TraesCS1B01G208000.1	Wheat	nucleus	52.12	47.91
Bra017520.1-P	Field mustard	nucleus	37.36	47.79
CDY59973	Canola	nucleus	38.15	47.74
CDY35183	Canola	nucleus	37.99	47.73
TraesCS1D01G196900.1	Wheat	nucleus	51.96	47.63
Bra017523.1-P	Field mustard	nucleus	37.83	47.53
KXG39194	Sorghum	nucleus	52.75	47.52
Zm00001d047017_P001	Maize	nucleus	52.43	47.51
CDY03183	Canola	nucleus	37.36	46.76
CDX77696	Canola	nucleus	8.79	46.67
AT5G46830.1	Thale cress	nucleus	37.21	46.38
TraesCS1A01G193200.1	Wheat	nucleus	50.08	46.03
Bra024993.1-P	Field mustard	nucleus	26.84	45.36
Bra024992.1-P	Field mustard	nucleus	18.68	43.91
CDX77699	Canola	nucleus	18.68	43.91
CDY33482	Canola	nucleus	18.52	43.54
KRH47834	Soybean	nucleus	28.41	39.01
KRH06400	Soybean	nucleus	28.26	38.63
HORVU0Hr1G025420.1	Barley	cytosol, nucleus	9.73	37.8
Zm00001d031717_P001	Maize	nucleus	14.13	35.43
OQU86344	Sorghum	nucleus	13.97	34.77
TraesCS5B01G306600.1	Wheat	nucleus	14.76	34.43
TraesCS1A01G369200.1	Wheat	nucleus	10.68	34.34
TraesCS5A01G306600.1	Wheat	nucleus	14.76	34.18
TraesCS2B01G469200.1	Wheat	nucleus	13.19	34.15
TraesCSU01G222600.1	Wheat	nucleus	13.19	34.15
TraesCS5D01G313400.1	Wheat	nucleus	14.6	34.07
TraesCS7D01G102200.1	Wheat	nucleus	13.66	33.98
TraesCS1D01G374800.1	Wheat	nucleus	14.13	33.96
HORVU5Hr1G080040.1	Barley	nucleus	14.29	33.96
Zm00001d052728_P001	Maize	nucleus	14.6	33.82
TraesCS5A01G306500.1	Wheat	nucleus	14.91	33.81
TraesCS5A01G306200.1	Wheat	nucleus	14.76	33.69
TraesCS5B01G307000.1	Wheat	nucleus	14.76	33.69
TraesCS5D01G313500.1	Wheat	nucleus	14.76	33.69
TraesCS5D01G313600.1	Wheat	nucleus	14.76	33.69
KXG25462	Sorghum	nucleus	14.6	33.45
OQU80778	Sorghum	nucleus	14.13	33.33
TraesCS5A01G306700.1	Wheat	peroxisome	14.29	33.21
TraesCS2B01G469300.1	Wheat	nucleus	13.34	33.2
TraesCS5D01G313700.1	Wheat	nucleus	14.29	33.09
OQU75588	Sorghum	nucleus	13.66	33.08
OQU80776	Sorghum	nucleus	13.66	33.08
Os09t0519100-00	Rice	nucleus	13.66	32.95
TraesCS2A01G448500.1	Wheat	nucleus	13.19	32.81
EER99201	Sorghum	nucleus	15.23	32.77
TraesCS5B01G307100.1	Wheat	nucleus	13.97	32.6
OQU80775	Sorghum	cytosol, nucleus, peroxisome, plastid	14.13	32.26
EER97058	Sorghum	cytosol, nucleus, plastid	13.97	32.25
TraesCS5A01G306400.1	Wheat	nucleus	11.15	31.84
TraesCS5B01G306800.1	Wheat	nucleus	13.97	31.79
Zm00001d006150_P001	Maize	nucleus	14.44	31.62
OQU80777	Sorghum	nucleus	13.81	31.43
TraesCS1B01G387900.1	Wheat	nucleus	11.77	31.38
Os08t0543700-00	Rice	nucleus, peroxisome, plastid	12.87	31.18
Zm00001d021164_P001	Maize	nucleus	14.13	31.03
KRH19522	Soybean	nucleus	24.18	30.43
KRH32144	Soybean	nucleus	23.86	30.16
HORVU5Hr1G080080.1	Barley	nucleus, plastid	9.89	30.0
HORVU5Hr1G079900.1	Barley	cytosol	12.24	28.89
KRH68922	Soybean	nucleus	24.49	28.36
KRH06456	Soybean	nucleus	26.06	26.86
KRH47899	Soybean	nucleus	26.06	26.52
KRH28296	Soybean	nucleus	14.13	25.79
KRG97199	Soybean	nucleus	24.8	25.52
KRH42021	Soybean	nucleus	7.54	24.62
KRH77192	Soybean	nucleus	12.87	24.05
KRH09683	Soybean	nucleus	9.42	22.9
KRH58186	Soybean	nucleus	12.87	22.71
KRH28295	Soybean	nucleus	10.99	22.36
KRH47401	Soybean	nucleus	7.06	22.17
KRH44510	Soybean	nucleus	9.42	21.82
KRH04348	Soybean	nucleus	12.72	21.72
KRH23623	Soybean	nucleus	7.38	21.56
KRH77195	Soybean	nucleus	12.24	21.2
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	19.0	21.15
KRH10664	Soybean	nucleus	12.24	21.14
KRH44509	Soybean	nucleus	7.06	21.13
KRH21680	Soybean	nucleus, vacuole	12.4	21.01
KRH04346	Soybean	nucleus	12.09	20.75
KRH23624	Soybean	nucleus	9.11	20.42
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	18.84	20.41
KRH49880	Soybean	nucleus	10.52	20.36
KRH58187	Soybean	endoplasmic reticulum	10.68	20.24
KRH47400	Soybean	nucleus	8.48	20.07
KRH04347	Soybean	nucleus	10.68	19.94
KRH58189	Soybean	nucleus	11.93	19.9
KRH44511	Soybean	nucleus	10.05	19.51
KRH00980	Soybean	nucleus	6.12	19.21
KRH77193	Soybean	nucleus	9.73	18.9
KRH40248	Soybean	cytosol	4.24	18.75
KRH47399	Soybean	nucleus	9.89	18.48
KRH48858	Soybean	nucleus	9.26	18.32
KRH71432	Soybean	nucleus	18.68	18.22
KRH32008	Soybean	extracellular, plastid	19.0	18.22
KRH23621	Soybean	nucleus	8.32	18.21
KRH66425	Soybean	nucleus	8.79	17.95
KRH09685	Soybean	cytosol	8.32	17.91
KRH00979	Soybean	nucleus	8.48	17.76
KRH41187	Soybean	nucleus	17.43	17.62
KRH40246	Soybean	nucleus, vacuole	7.38	17.41
KRH59908	Soybean	nucleus	17.11	17.27
KRH47398	Soybean	nucleus	9.89	17.03
KRH48860	Soybean	nucleus	8.32	16.77
KRH66407	Soybean	nucleus	10.2	16.67
KRH44512	Soybean	nucleus	9.73	16.53
KRH00981	Soybean	nucleus	8.32	16.31
KRH48847	Soybean	nucleus	9.58	16.01
KRH65046	Soybean	nucleus	15.54	15.3
KRH48144	Soybean	nucleus	15.54	15.23

Protein Annotations

EntrezGene:100790854	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02000420	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G096600
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1J6C6
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRH75613	ProteinID:KRH75613	ProteinID:KRH75613.1	InterPro:MYC/MYB_N
PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF43	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002336FB0	InterPro:bHLH_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:31363405..31366298

Molecular Weight (calculated)

69684.5 Da

IEP (calculated)

5.105

GRAVY (calculated)

-0.593

Length

637 amino acids

Sequence
(BLAST)

001: MTEYRMNLWT DDNSSVMEAF MSSSDLSSLW LPTPQSAAST TTPGLETTRA PPPQSHSLLN QETLQQRLQT LIEGARESWT YAIFWQSSYD YSSGTSLLGW
101: GDGYYKGEED KVKAKGKTPK TTSSAEQDHR KKVLRELNSL ISGPSASVDD VDEEVTDTEW FFLVSMTQSF VNGSGLPGQA FFNSSPVWVA GPDRLSESVC
201: ERAHQGQMFG LQTLVCIPSA NGVVELASTE VIFQNPDLMN KVRDLFNFNN NPETGSWALN CVATTDQGEN DPSSLWLNPE IRDSSTVAPP NSTVNKTLQF
301: ETPGSSTLTD TPSAAAVHVP KSNGQGFFSR ELNFSNSLKP ESGEILSFGE SKKSSYNGSF FPGVVAIEEN NKKRSPVSRS SIDDGMLSFT SLPAANIKSG
401: SGGAGAGGGD SDHSDLEASM VKQADSRVME PEKRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNVSKM DKASLLGDAI SYINELKLKL
501: NGLDSEKGEL EKQLDSAKKE LELATKNPPP PPPPPPGLPP SNNEEAKKTT TKLADLEIEV KIIGWDAMIR IQCSKKNHPA ARLMAALKDL DLEVHHASVS
601: VVNDLMIQQA TVNMGNKFYT QEQLLSALSS KVGDEQR

Best Arabidopsis Sequence Match ( AT1G32640.1 )
(BLAST)

001: MTDYRLQPTM NLWTTDDNAS MMEAFMSSSD ISTLWPPAST TTTTATTETT PTPAMEIPAQ AGFNQETLQQ RLQALIEGTH EGWTYAIFWQ PSYDFSGASV
101: LGWGDGYYKG EEDKANPRRR SSSPPFSTPA DQEYRKKVLR ELNSLISGGV APSDDAVDEE VTDTEWFFLV SMTQSFACGA GLAGKAFATG NAVWVSGSDQ
201: LSGSGCERAK QGGVFGMHTI ACIPSANGVV EVGSTEPIRQ SSDLINKVRI LFNFDGGAGD LSGLNWNLDP DQGENDPSMW INDPIGTPGS NEPGNGAPSS
301: SSQLFSKSIQ FENGSSSTIT ENPNLDPTPS PVHSQTQNPK FNNTFSRELN FSTSSSTLVK PRSGEILNFG DEGKRSSGNP DPSSYSGQTQ FENKRKRSMV
401: LNEDKVLSFG DKTAGESDHS DLEASVVKEV AVEKRPKKRG RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPNVSK MDKASLLGDA IAYINELKSK
501: VVKTESEKLQ IKNQLEEVKL ELAGRKASAS GGDMSSSCSS IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL ELEVNHASMS VVNDLMIQQA
601: TVKMGFRIYT QEQLRASLIS KIG

Arabidopsis Description

MYC2ZBF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W7C3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.