CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04347	Soybean	nucleus	89.88	88.56
KRH77193	Soybean	nucleus	52.08	53.35
KRH40248	Soybean	cytosol	18.45	43.06
KRH09683	Soybean	nucleus	30.95	39.69
KRH23624	Soybean	nucleus	32.44	38.38
KRH49880	Soybean	nucleus	36.9	37.69
KRH28295	Soybean	nucleus	33.93	36.42
KRH23623	Soybean	nucleus	23.51	36.24
KRH44509	Soybean	nucleus	22.32	35.21
KRH44511	Soybean	nucleus	34.23	35.06
KRH10664	Soybean	nucleus	38.39	34.96
KRH77195	Soybean	nucleus	38.1	34.78
KRH23621	Soybean	nucleus	30.06	34.71
KRH47399	Soybean	nucleus	35.12	34.6
KRH21680	Soybean	nucleus, vacuole	38.69	34.57
KRH04346	Soybean	nucleus	38.1	34.5
KRH47401	Soybean	nucleus	20.83	34.48
KRH09685	Soybean	cytosol	30.36	34.46
KRH58189	Soybean	nucleus	38.99	34.29
KRH42021	Soybean	nucleus	19.05	32.82
KRH58186	Soybean	nucleus	34.52	32.13
KRH04348	Soybean	nucleus	35.42	31.9
KRH44510	Soybean	nucleus	25.89	31.64
Solyc02g091800.2.1	Tomato	nucleus	32.44	31.41
PGSC0003DMT400078696	Potato	nucleus	32.44	31.41
KRH28296	Soybean	nucleus	32.44	31.23
KRH77192	Soybean	nucleus	31.55	31.09
KRH47400	Soybean	nucleus	24.7	30.86
KRH00979	Soybean	nucleus	27.68	30.59
KRH66425	Soybean	nucleus	28.27	30.45
KRH00980	Soybean	nucleus	18.15	30.05
KRH44512	Soybean	nucleus	33.04	29.6
KRH47398	Soybean	nucleus	32.44	29.46
KRH48860	Soybean	nucleus	27.38	29.11
KRH00981	Soybean	nucleus	27.38	28.31
KRH40246	Soybean	nucleus, vacuole	22.32	27.78
KRH66407	Soybean	nucleus	31.85	27.44
KRH48858	Soybean	nucleus	26.19	27.33
KRH48847	Soybean	nucleus	30.95	27.3
KRH47834	Soybean	nucleus	16.37	11.85
KRH06400	Soybean	nucleus	16.07	11.59
KRH75613	Soybean	nucleus	20.24	10.68
KRH32144	Soybean	nucleus	15.48	10.32
KRH19522	Soybean	nucleus	15.48	10.28
KRH45440	Soybean	nucleus	19.94	10.24
KRH74418	Soybean	nucleus	19.35	10.12
KRH68922	Soybean	nucleus	14.88	9.09
KRH39540	Soybean	nucleus	19.05	8.76
KRH67189	Soybean	cytosol, mitochondrion, nucleus, plastid	14.88	8.74
KRH06456	Soybean	nucleus	15.48	8.41
KRH41187	Soybean	nucleus	15.77	8.41
KRG95511	Soybean	cytosol, mitochondrion, nucleus, plastid	14.58	8.33
KRH32008	Soybean	extracellular, plastid	16.37	8.28
KRH71432	Soybean	nucleus	16.07	8.27
KRG97199	Soybean	nucleus	15.18	8.24
KRH05127	Soybean	nucleus, plastid	7.14	8.19
KRH59908	Soybean	nucleus	15.18	8.08
KRH47899	Soybean	nucleus	14.88	7.99
KRH65046	Soybean	nucleus	14.29	7.42
KRH48144	Soybean	nucleus	13.99	7.23

Protein Annotations

EntrezGene:100787596	MapMan:15.5.32	MapMan:25.4.1.7	Gene3D:4.10.280.10	EMBL:ACUP02003226	ncoils:Coil
EnsemblPlantsGene:GLYMA_05G110700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:K7KPK7	EnsemblPlants:KRH58187	ProteinID:KRH58187	ProteinID:KRH58187.1
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF48	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000233A56A	InterPro:bHLH_dom	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:29399811..29402443

Molecular Weight (calculated)

37748.0 Da

IEP (calculated)

6.022

GRAVY (calculated)

-0.460

Length

336 amino acids

Sequence
(BLAST)

001: MEESWTSCLC DMEPDDYSFI GQSDIKVDDV NGCLVSPHDV ATALLEKNQQ SLFSRESHSS AAESGLERPF KLPKREQLSQ KIASSSTPSS YILSFDNMNP
101: PTIKVESASK PGTKVVNLEK ALPSKNEPTR PQENKKMGSF ARSSHHTQDH IIAERMRREK ISQQFIALSA LIPDLKKMDK VSLLGEAIRY VKQLKEQVKL
201: LEEQSKRKNE ESVMFAKKSQ VFLADEDVSD TSSNSCEFGN SDDPSSKANF LSLPEVEARV SKKNVLIRIL CEKEKTVLVN IFREIEKLHL SIIYSSALSF
301: GSSVLDTTIV AEMEDEFNMG VKELARNLRV GLMQFM

Best Arabidopsis Sequence Match ( AT2G22750.3 )
(BLAST)

001: MATAMNVFST KWSSELDIEE YSIIHQFHMN SLVGDVPQSL SSLDDTTTCY NLDASCNKSL VEERPSKILK TTHISPNLHP FSSSNPPPPK HQPSSRILSF
101: EKTGLHVMNH NSPNLIFSPK DEEIGLPEHK KAELIIRGTK RAQSLTRSQS NAQDHILAER KRREKLTQRF VALSALIPGL KKMDKASVLG DAIKHIKYLQ
201: ESVKEYEEQK KEKTMESVVL VKKSSLVLDE NHQPSSSSSS DGNRNSSSSN LPEIEVRVSG KDVLIKILCE KQKGNVIKIM GEIEKLGLSI TNSNVLPFGP
301: TFDISIIAQK NNNFDMKIED VVKNLSFGLS KLT

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G22750]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.