CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78808	Canola	nucleus	96.42	97.58
Bra013263.1-P	Field mustard	nucleus	45.05	97.42
Bra013264.1-P	Field mustard	nucleus	47.44	93.6
AT4G17880.1	Thale cress	nucleus	75.09	74.7
CDX77688	Canola	nucleus	53.41	69.25
CDY58502	Canola	nucleus	52.9	69.04
CDY03195	Canola	nucleus	62.12	66.79
CDY35179	Canola	nucleus	62.63	65.3
CDX73261	Canola	nucleus	40.61	53.72
CDY26910	Canola	nucleus	40.61	53.72
Solyc08g005050.2.1	Tomato	nucleus	41.3	52.16
VIT_02s0012g01320.t01	Wine grape	nucleus	58.53	51.73
PGSC0003DMT400002963	Potato	nucleus	51.02	50.0
KRH75613	Soybean	nucleus	54.27	49.92
CDX84081	Canola	nucleus	43.34	48.02
KRH45440	Soybean	nucleus	53.41	47.86
KRH74418	Soybean	nucleus	51.19	46.73
CDX77696	Canola	nucleus	9.56	46.67
Solyc08g076930.1.1	Tomato	nucleus	54.61	46.44
PGSC0003DMT400045204	Potato	nucleus	54.78	46.25
CDY03185	Canola	nucleus	35.32	43.76
CDY59973	Canola	nucleus	37.71	43.42
KRH39540	Soybean	nucleus	53.75	43.09
CDY03183	Canola	nucleus	36.86	42.44
CDY35183	Canola	nucleus	36.52	42.21
CDX77699	Canola	nucleus	19.11	41.33
CDY33482	Canola	nucleus	18.77	40.59
CDX77694	Canola	nucleus	16.89	39.13
CDY27319	Canola	nucleus	25.94	34.31
CDY66312	Canola	nucleus	25.77	32.97
CDY70013	Canola	nucleus	14.16	32.94
CDX80023	Canola	nucleus	27.3	32.85
CDY56874	Canola	nucleus	27.13	32.38
CDX90525	Canola	nucleus	23.72	30.48
CDY34468	Canola	nucleus	23.21	30.16
CDY32242	Canola	nucleus	23.04	29.93
CDX90021	Canola	nucleus	26.28	28.52
CDY45357	Canola	cytosol, golgi, nucleus	9.22	28.42
CDY70012	Canola	nucleus	11.77	25.84
CDY09695	Canola	nucleus	21.33	25.67
CDX86891	Canola	nucleus	20.82	23.42
CDX99505	Canola	nucleus	20.48	23.03
CDY13737	Canola	nucleus	11.26	22.37
CDX76899	Canola	nucleus	12.12	21.98
CDY25628	Canola	nucleus	11.6	21.12
CDY49678	Canola	nucleus	11.95	20.96
CDX93135	Canola	nucleus	9.39	20.6
CDX89627	Canola	nucleus	9.39	20.6
CDY72199	Canola	nucleus	11.6	20.36
CDX89511	Canola	nucleus	11.09	20.25
CDX75679	Canola	nucleus	11.6	20.24
CDX69336	Canola	nucleus	11.26	19.53
CDY39747	Canola	nucleus	17.92	18.78
CDY58950	Canola	nucleus	18.26	18.54
CDY25513	Canola	nucleus	18.09	18.37
CDY70506	Canola	nucleus	16.21	17.79
CDY52591	Canola	nucleus	9.56	17.78
CDY13735	Canola	nucleus	8.7	17.65
CDY34367	Canola	nucleus	17.92	17.62
CDY52593	Canola	nucleus	8.53	17.54
CDX89513	Canola	nucleus	9.73	17.54
CDY07214	Canola	mitochondrion, nucleus	16.04	17.34
CDY25630	Canola	nucleus	9.56	17.23
CDX89512	Canola	nucleus	8.7	17.23
CDY08314	Canola	nucleus	17.75	17.19
CDX91907	Canola	nucleus	15.87	17.1
CDY51155	Canola	mitochondrion, nucleus	15.7	16.97
CDY25629	Canola	nucleus	8.53	16.67
CDY72121	Canola	nucleus	8.36	15.91

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078I392	UniProt:A0A078I392	EnsemblPlants:CDY44507	ProteinID:CDY44507
ProteinID:CDY44507.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00080269001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	PFAM:PF00010
PFAM:PF14215	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF43	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0004EEED72	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

BnaC01g10420DBnaC01g10420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I392]

Coordinates

chrLK032592:+:139146..141244

Molecular Weight (calculated)

64171.8 Da

IEP (calculated)

4.987

GRAVY (calculated)

-0.630

Length

586 amino acids

Sequence
(BLAST)

001: MSSTNVQLTD HHLNQSTNGT NLWSTTEDNA SVMEPLIGSE HSSLWHQPPL TLPPPHVTED TLQQRLQALI EGARESWTYA VFWQLSHDFA GEDISNTAAL
101: LSWGDGYYKG EEERKSRKRK PNPVSAAEQE HRKRVIRELN SLISGGGGTV SSSGGSSDEA GDEDVSDTEW FFLVSMTQSF VNGSGLPGRA FSSSRTIWLS
201: GSNALAGSSC ERARQGQVYG LETMVCIPTQ NGVVELGSLE IIHQSSDLVE KVNSFFSFNG GGGGGESGSW EFNLNPDQGE NDPATWINEP NVTGIEPVLG
301: APATSNSDSQ TASKLCNGSS VEHPKQQQNP QISSSGFVEG DSNKKKRCLV SDKEEEMLSF TSVLPLPTKS NDSNRSDLEA SVVKEAESGR IVAEPEKKPR
401: KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYSLRAVVPN VSKMDKASLL GDAISYINEL KAKLQKAEAD KEELQKQIGG MSKEVGDGNV KSSVKDQKCL
501: DQDSGVSIEV EIDVKIIGWD AMIRIQCGKN NHPGAKFMEA LKELELEVNH ASLSVVNEFM IQQATVKMGN QFFTQDQLKA ALMERV

Best Arabidopsis Sequence Match ( AT4G17880.1 )
(BLAST)

001: MSPTNVQVTD YHLNQSKTDT TNLWSTDDDA SVMEAFIGGG SDHSSLFPPL PPPPLPQVNE DNLQQRLQAL IEGANENWTY AVFWQSSHGF AGEDNNNNNT
101: VLLGWGDGYY KGEEEKSRKK KSNPASAAEQ EHRKRVIREL NSLISGGVGG GDEAGDEEVT DTEWFFLVSM TQSFVKGTGL PGQAFSNSDT IWLSGSNALA
201: GSSCERARQG QIYGLQTMVC VATENGVVEL GSSEIIHQSS DLVDKVDTFF NFNNGGGEFG SWAFNLNPDQ GENDPGLWIS EPNGVDSGLV AAPVMNNGGN
301: DSTSNSDSQP ISKLCNGSSV ENPNPKVLKS CEMVNFKNGI ENGQEEDSSN KKRSPVSNNE EGMLSFTSVL PCDSNHSDLE ASVAKEAESN RVVVEPEKKP
401: RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYSLRAVVP NVSKMDKASL LGDAISYISE LKSKLQKAES DKEELQKQID VMNKEAGNAK SSVKDRKCLN
501: QESSVLIEME VDVKIIGWDA MIRIQCSKRN HPGAKFMEAL KELDLEVNHA SLSVVNDLMI QQATVKMGNQ FFTQDQLKVA LTEKVGECP

Arabidopsis Description

MYC4Transcription factor MYC4 [Source:UniProtKB/Swiss-Prot;Acc:O49687]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.