CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90230
CDX92171
CDX95810
CDX99884
CDY26288
CDY26697
CDY41023
CDY51470

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32640.1	CDY26697	AT1G19180.1	18547396
AT1G32640.1	CDY41023	AT1G19180.1	18547396
AT1G32640.1	CDX90230	AT1G30135.1	19309455
AT1G32640.1	CDX99884	AT1G30135.1	19309455
AT1G32640.1	CDY26288	AT1G30135.1	19309455
AT1G32640.1	CDY51470	AT1G30135.1	19309455
AT1G32640.1	CDX92171	AT3G17860.1	17637675
AT1G32640.1	CDX95810	AT3G17860.1	17637675

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26910	Canola	nucleus	98.65	98.65
Bra010178.1-P	Field mustard	nucleus	97.52	72.0
CDX84081	Canola	nucleus	79.91	66.92
AT1G32640.1	Thale cress	nucleus	91.42	65.01
CDY58502	Canola	nucleus	51.69	51.0
CDX77688	Canola	nucleus	51.24	50.22
CDY03185	Canola	nucleus	48.53	45.45
CDY59973	Canola	nucleus	51.92	45.19
CDY03183	Canola	nucleus	50.79	44.2
CDY35183	Canola	nucleus	50.34	43.98
CDY03195	Canola	nucleus	53.5	43.49
CDY33482	Canola	nucleus	26.41	43.17
KRH75613	Soybean	nucleus	61.63	42.86
CDX77699	Canola	nucleus	26.19	42.8
VIT_02s0012g01320.t01	Wine grape	nucleus	63.43	42.38
CDY35179	Canola	nucleus	53.27	41.99
CDX77694	Canola	nucleus	23.93	41.9
CDX78808	Canola	nucleus	53.95	41.28
KRH45440	Soybean	nucleus	60.72	41.13
CDX77696	Canola	nucleus	11.06	40.83
CDY44507	Canola	nucleus	53.72	40.61
PGSC0003DMT400002963	Potato	nucleus	54.18	40.13
KRH74418	Soybean	nucleus	57.11	39.41
Solyc08g005050.2.1	Tomato	nucleus	41.08	39.22
Solyc08g076930.1.1	Tomato	nucleus	60.95	39.19
PGSC0003DMT400045204	Potato	nucleus	60.72	38.76
KRH39540	Soybean	nucleus	58.92	35.7
CDY27319	Canola	nucleus	28.67	28.67
CDY66312	Canola	nucleus	27.77	26.86
CDY70013	Canola	nucleus	14.67	25.79
CDX80023	Canola	nucleus	27.99	25.46
CDY56874	Canola	nucleus	27.99	25.25
CDY32242	Canola	nucleus	25.06	24.61
CDY34468	Canola	nucleus	25.06	24.61
CDX90525	Canola	nucleus	24.83	24.12
CDX90021	Canola	nucleus	27.31	22.41
CDY45357	Canola	cytosol, golgi, nucleus	9.48	22.11
CDY09695	Canola	nucleus	24.15	21.97
CDY49678	Canola	nucleus	16.03	21.26
CDX89627	Canola	nucleus	12.64	20.97
CDX93135	Canola	nucleus	12.64	20.97
CDY72199	Canola	nucleus	15.58	20.66
CDX76899	Canola	nucleus	14.9	20.43
CDY13737	Canola	nucleus	13.32	20.0
CDY25628	Canola	nucleus	14.45	19.88
CDY70012	Canola	nucleus	11.96	19.85
CDX75679	Canola	nucleus	14.9	19.64
CDX69336	Canola	nucleus	14.9	19.53
CDX86891	Canola	nucleus	22.8	19.39
CDX99505	Canola	nucleus	22.57	19.19
CDX89511	Canola	nucleus	13.77	19.0
CDY52591	Canola	nucleus	12.87	18.1
CDX89513	Canola	nucleus	13.09	17.85
CDY25630	Canola	nucleus	12.87	17.54
CDY13735	Canola	nucleus	10.38	15.92
CDX89512	Canola	nucleus	10.61	15.88
CDY52593	Canola	nucleus	10.16	15.79
CDY25629	Canola	nucleus	10.61	15.67
CDY39747	Canola	nucleus	19.64	15.56
CDY58950	Canola	nucleus	19.64	15.08
CDY25513	Canola	nucleus	19.64	15.08
CDY70506	Canola	nucleus	18.06	14.98
CDX91907	Canola	nucleus	17.83	14.52
CDY34367	Canola	nucleus	19.41	14.43
CDY08314	Canola	nucleus	19.19	14.05
CDY07214	Canola	mitochondrion, nucleus	17.16	14.02
CDY51155	Canola	mitochondrion, nucleus	16.93	13.84
CDY72121	Canola	nucleus	9.26	13.31

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078C861	EnsemblPlants:CDX73261	ProteinID:CDX73261	ProteinID:CDX73261.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00106294001
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215
PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF43	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EEDC2F
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BnaC05g28450D

Coordinates

chrLK031798:-:189570..191593

Molecular Weight (calculated)

48374.2 Da

IEP (calculated)

4.913

GRAVY (calculated)

-0.388

Length

443 amino acids

Sequence
(BLAST)

001: MTEPTMNLWT TDDNASMMEA FMSSSSDISA LWPPVTTTAT ASTTAPAPAG FNEETLQQRL QALIEGTNEG WTYAIFWQPS YDFSGASVLG WGDGYYKGEE
101: DKAKPRQRTS PPPFSTPADQ EYRKKVLREL NSFACGSGLA GKAFSTGNAV WVYGSDQLTG SGCERAKQGG VFGMQTIACI PSANGVVELG STEQIRQSSD
201: LMNKVRVLFN FNGGAGDLSC LNWNLDPDQG ENDPSMWIND PIGVPEQGNG APSSSSQLFA KSIQFENEPL NHVEAERQRR EKLNQRFYAL RAVVPNVSKM
301: DKASLLGDAI AYINELKSKV TKTESEKTQI KTQLEEVKME LAGRKASAGG DLSSSCSLTA IKPVGMEIEV KIIGWDAMIR VESSKRNHPA ARLMSALMDL
401: ELEVNHASMS VVNDLMIQQA TVKMGFRIYT QEQLRASLIS KIG

Best Arabidopsis Sequence Match ( AT4G00870.1 )
(BLAST)

001: MYNLTFSPSL SSSLLSFTQQ TPAAIVSSSP PDLVLQQKLR FVVETSPDRW AYVIFWQKMF DDQSDRSYLV WVDGHFCGNK NNNSQENYTT NSIECELMMD
101: GGDDLELFYA ASFYGEDRSP RKEVSDESLV WLTGPDELRF SNYERAKEAG FHGVHTLVSI PINNGIIELG SSESIIQNRN FINRVKSIFG SGKTTKHTNQ
201: TGSYPKPAVS DHSKSGNQQF GSERKRRRKL ETTRVAAATK EKHHPAVLSH VEAEKQRREK LNHRFYALRA IVPKVSRMDK ASLLSDAVSY IESLKSKIDD
301: LETEIKKMKM TETDKLDNSS SNTSPSSVEY QVNQKPSKSN RGSDLEVQVK IVGEEAIIRV QTENVNHPTS ALMSALMEMD CRVQHANASR LSQVMVQDVV
401: VLVPEGLRSE DRLRTTLVRT LSL

Arabidopsis Description

BHLH14Transcription factor bHLH14 [Source:UniProtKB/Swiss-Prot;Acc:O23090]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.