Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030210.1-P | Field mustard | nucleus | 98.45 | 98.45 |
| CDX89511 | Canola | nucleus | 90.37 | 90.65 |
| CDX76899 | Canola | nucleus | 81.68 | 81.42 |
| AT2G22750.3 | Thale cress | nucleus | 83.54 | 80.78 |
| CDY13737 | Canola | nucleus | 73.29 | 80.0 |
| CDY72199 | Canola | nucleus | 60.25 | 58.08 |
| CDX69336 | Canola | nucleus | 60.25 | 57.4 |
| CDX75679 | Canola | nucleus | 59.63 | 57.14 |
| CDY49678 | Canola | nucleus | 59.01 | 56.89 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 27.64 | 44.28 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 27.95 | 38.46 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 31.68 | 38.35 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 38.2 | 37.05 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 33.85 | 36.95 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 37.27 | 35.93 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.4 | 35.4 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 35.4 | 35.19 |
| CDX89627 | Canola | nucleus | 28.88 | 34.83 |
| VIT_00s0927g00010.t01 | Wine grape | nucleus | 24.53 | 34.65 |
| CDX93135 | Canola | nucleus | 28.26 | 34.08 |
| PGSC0003DMT400033757 | Potato | nucleus | 21.74 | 33.33 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 33.54 | 33.03 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 31.68 | 32.59 |
| KXG37671 | Sorghum | nucleus | 36.02 | 32.58 |
| CDX89512 | Canola | nucleus | 29.5 | 32.09 |
| Zm00001d033848_P004 | Maize | nucleus | 36.02 | 31.87 |
| Os03t0725800-01 | Rice | nucleus | 35.4 | 31.75 |
| CDY13735 | Canola | nucleus | 28.26 | 31.49 |
| Solyc02g091810.1.1 | Tomato | nucleus | 30.75 | 31.13 |
| PGSC0003DMT400078698 | Potato | nucleus | 20.19 | 31.1 |
| CDY25629 | Canola | nucleus | 28.88 | 31.0 |
| Solyc02g091820.1.1 | Tomato | nucleus | 31.37 | 30.98 |
| CDY52593 | Canola | nucleus | 27.02 | 30.53 |
| Solyc05g009640.2.1 | Tomato | cytosol, nucleus, peroxisome | 22.05 | 30.34 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 31.99 | 30.21 |
| KRH42021 | Soybean | nucleus | 18.01 | 29.74 |
| Zm00001d013370_P001 | Maize | plastid | 34.16 | 29.49 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 33.85 | 29.07 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 33.54 | 28.88 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 33.54 | 28.65 |
| PGSC0003DMT400078699 | Potato | nucleus | 28.57 | 28.48 |
| CDY52591 | Canola | nucleus | 27.64 | 28.25 |
| VIT_00s0384g00020.t01 | Wine grape | nucleus | 17.08 | 27.92 |
| Solyc06g064580.1.1 | Tomato | nucleus | 25.78 | 27.3 |
| CDY25630 | Canola | nucleus | 27.33 | 27.08 |
| Solyc06g064590.1.1 | Tomato | nucleus | 23.29 | 26.69 |
| CDX89513 | Canola | nucleus | 26.71 | 26.46 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 24.53 | 23.8 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 24.53 | 23.17 |
| CDX77696 | Canola | nucleus | 8.39 | 22.5 |
| CDY70013 | Canola | nucleus | 15.84 | 20.24 |
| CDY33482 | Canola | nucleus | 14.6 | 17.34 |
| CDX77699 | Canola | nucleus | 14.6 | 17.34 |
| CDY26910 | Canola | nucleus | 19.88 | 14.45 |
| CDX73261 | Canola | nucleus | 19.88 | 14.45 |
| CDX77688 | Canola | nucleus | 19.88 | 14.16 |
| CDY58502 | Canola | nucleus | 19.57 | 14.03 |
| CDY72121 | Canola | nucleus | 13.35 | 13.96 |
| CDY27319 | Canola | nucleus | 17.7 | 12.87 |
| CDX84081 | Canola | nucleus | 21.12 | 12.85 |
| CDY66312 | Canola | nucleus | 17.08 | 12.01 |
| CDY03195 | Canola | nucleus | 20.19 | 11.93 |
| CDX78808 | Canola | nucleus | 21.12 | 11.74 |
| CDY35179 | Canola | nucleus | 20.5 | 11.74 |
| CDX90021 | Canola | nucleus | 19.57 | 11.67 |
| CDY35183 | Canola | nucleus | 18.32 | 11.64 |
| CDY03185 | Canola | nucleus | 17.08 | 11.63 |
| CDY56874 | Canola | nucleus | 17.7 | 11.61 |
| CDY44507 | Canola | nucleus | 21.12 | 11.6 |
| CDX80023 | Canola | nucleus | 17.39 | 11.5 |
| CDY59973 | Canola | nucleus | 18.01 | 11.39 |
| CDY03183 | Canola | nucleus | 18.01 | 11.39 |
| CDY34468 | Canola | nucleus | 15.84 | 11.31 |
| CDY32242 | Canola | nucleus | 15.22 | 10.86 |
| CDX90525 | Canola | nucleus | 14.91 | 10.53 |
| CDY09695 | Canola | nucleus | 13.98 | 9.24 |
| CDY25513 | Canola | nucleus | 16.15 | 9.01 |
| CDY58950 | Canola | nucleus | 16.15 | 9.01 |
| CDY39747 | Canola | nucleus | 15.53 | 8.94 |
| CDX99505 | Canola | nucleus | 14.29 | 8.83 |
| CDX86891 | Canola | nucleus | 14.29 | 8.83 |
| CDY34367 | Canola | nucleus | 16.15 | 8.72 |
| CDY08314 | Canola | nucleus | 15.53 | 8.26 |
| CDY70506 | Canola | nucleus | 13.66 | 8.24 |
| CDX91907 | Canola | nucleus | 13.04 | 7.72 |
| CDY07214 | Canola | mitochondrion, nucleus | 12.42 | 7.38 |
| CDY51155 | Canola | mitochondrion, nucleus | 12.42 | 7.38 |
| CDX77694 | Canola | nucleus | 3.73 | 4.74 |
| CDY70012 | Canola | nucleus | 3.73 | 4.49 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 1.86 | 3.16 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | GO:A0A078GM01 | UniProt:A0A078GM01 | EnsemblPlants:CDY25628 |
| ProteinID:CDY25628 | ProteinID:CDY25628.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00032910001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF48 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEB6E7 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaA04g13200DBnaA04g13200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GM01]
Coordinates
chrLK032177:+:355847..357539
Molecular Weight (calculated)
36198.3 Da
IEP (calculated)
7.139
GRAVY (calculated)
-0.519
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTMNVFST KWSSEMDIEE YSIIHQYHMN SFLGDFPQSL SSLDDTTTCY NIDASCDDDL LEEKPSKILK TTHVLPKLHP CPTYNPPPQS QPPSRILSFE
101: KTGLKVMNHN SPNLIFSPKK EVGSPDQITR GTKRAQPLTR SQSNAQDHIL AERKRREKLT QRFVALSAQI PGLKKMDKAS VLGDAIKHIK YLQESVKEYE
201: EQKKERTMES MVLVKKSQLV LDENYQLSSS SSDGNRDCSS SNLPEMEVRV SGNDVLIKIL CEKQNCNLIK IMSEVEKLGL SITNSSVLPF GPTFDISIIS
301: QKTSNFDMKV EDLVKSLSCG LS
101: KTGLKVMNHN SPNLIFSPKK EVGSPDQITR GTKRAQPLTR SQSNAQDHIL AERKRREKLT QRFVALSAQI PGLKKMDKAS VLGDAIKHIK YLQESVKEYE
201: EQKKERTMES MVLVKKSQLV LDENYQLSSS SSDGNRDCSS SNLPEMEVRV SGNDVLIKIL CEKQNCNLIK IMSEVEKLGL SITNSSVLPF GPTFDISIIS
301: QKTSNFDMKV EDLVKSLSCG LS
001: MATAMNVFST KWSSELDIEE YSIIHQFHMN SLVGDVPQSL SSLDDTTTCY NLDASCNKSL VEERPSKILK TTHISPNLHP FSSSNPPPPK HQPSSRILSF
101: EKTGLHVMNH NSPNLIFSPK DEEIGLPEHK KAELIIRGTK RAQSLTRSQS NAQDHILAER KRREKLTQRF VALSALIPGL KKMDKASVLG DAIKHIKYLQ
201: ESVKEYEEQK KEKTMESVVL VKKSSLVLDE NHQPSSSSSS DGNRNSSSSN LPEIEVRVSG KDVLIKILCE KQKGNVIKIM GEIEKLGLSI TNSNVLPFGP
301: TFDISIIAQK NNNFDMKIED VVKNLSFGLS KLT
101: EKTGLHVMNH NSPNLIFSPK DEEIGLPEHK KAELIIRGTK RAQSLTRSQS NAQDHILAER KRREKLTQRF VALSALIPGL KKMDKASVLG DAIKHIKYLQ
201: ESVKEYEEQK KEKTMESVVL VKKSSLVLDE NHQPSSSSSS DGNRNSSSSN LPEIEVRVSG KDVLIKILCE KQKGNVIKIM GEIEKLGLSI TNSNVLPFGP
301: TFDISIIAQK NNNFDMKIED VVKNLSFGLS KLT
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G22750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.