Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93135 | Canola | nucleus | 97.38 | 97.38 |
| Bra013128.1-P | Field mustard | nucleus | 96.63 | 96.63 |
| Solyc01g106460.2.1 | Tomato | nucleus | 40.07 | 44.03 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 32.96 | 43.78 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 34.83 | 39.74 |
| VIT_03s0088g01240.t01 | Wine grape | nucleus | 45.32 | 35.17 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 41.95 | 34.57 |
| KRH49880 | Soybean | nucleus | 41.95 | 34.04 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 41.2 | 33.64 |
| KRH10664 | Soybean | nucleus | 46.44 | 33.6 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 41.95 | 33.53 |
| KRH21680 | Soybean | nucleus, vacuole | 47.19 | 33.51 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 32.96 | 33.08 |
| PGSC0003DMT400013074 | Potato | nucleus | 43.07 | 32.58 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 35.96 | 32.54 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.58 | 31.99 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 39.7 | 31.93 |
| Os03t0725800-01 | Rice | nucleus | 42.7 | 31.75 |
| CDY13737 | Canola | nucleus | 34.83 | 31.53 |
| KXG37671 | Sorghum | nucleus | 41.95 | 31.46 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 36.7 | 31.31 |
| CDX69336 | Canola | nucleus | 38.95 | 30.77 |
| Zm00001d033848_P004 | Maize | nucleus | 41.57 | 30.49 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 38.58 | 30.21 |
| CDX75679 | Canola | nucleus | 37.83 | 30.06 |
| CDY49678 | Canola | nucleus | 37.45 | 29.94 |
| CDY72199 | Canola | nucleus | 37.45 | 29.94 |
| CDX76899 | Canola | nucleus | 35.96 | 29.72 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 41.2 | 29.41 |
| CDX89511 | Canola | nucleus | 35.21 | 29.28 |
| Zm00001d013370_P001 | Maize | plastid | 40.45 | 28.95 |
| CDY25628 | Canola | nucleus | 34.83 | 28.88 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 40.45 | 28.8 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 40.45 | 28.65 |
| CDY13735 | Canola | nucleus | 28.84 | 26.64 |
| CDY52593 | Canola | nucleus | 28.09 | 26.32 |
| CDY52591 | Canola | nucleus | 30.71 | 26.03 |
| CDX89512 | Canola | nucleus | 28.84 | 26.01 |
| CDY25630 | Canola | nucleus | 29.96 | 24.62 |
| CDX89513 | Canola | nucleus | 29.59 | 24.31 |
| CDY25629 | Canola | nucleus | 26.97 | 24.0 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 28.84 | 23.19 |
| CDX77696 | Canola | nucleus | 10.11 | 22.5 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 26.22 | 20.53 |
| CDY70013 | Canola | nucleus | 17.23 | 18.25 |
| CDY33482 | Canola | nucleus | 15.73 | 15.5 |
| CDX77699 | Canola | nucleus | 15.73 | 15.5 |
| CDY72121 | Canola | nucleus | 17.23 | 14.94 |
| CDY58502 | Canola | nucleus | 21.35 | 12.69 |
| CDX73261 | Canola | nucleus | 20.97 | 12.64 |
| CDY26910 | Canola | nucleus | 20.97 | 12.64 |
| CDX77688 | Canola | nucleus | 21.35 | 12.61 |
| CDY27319 | Canola | nucleus | 19.1 | 11.51 |
| CDY66312 | Canola | nucleus | 19.48 | 11.35 |
| CDY03185 | Canola | nucleus | 19.85 | 11.21 |
| CDY56874 | Canola | nucleus | 20.22 | 11.0 |
| CDX84081 | Canola | nucleus | 21.72 | 10.96 |
| CDX80023 | Canola | nucleus | 19.85 | 10.88 |
| CDY35183 | Canola | nucleus | 20.22 | 10.65 |
| CDY03195 | Canola | nucleus | 21.35 | 10.46 |
| CDY32242 | Canola | nucleus | 17.6 | 10.42 |
| CDY34468 | Canola | nucleus | 17.23 | 10.2 |
| CDY35179 | Canola | nucleus | 21.35 | 10.14 |
| CDX90021 | Canola | nucleus | 20.22 | 10.0 |
| CDX86891 | Canola | nucleus | 19.48 | 9.98 |
| CDX99505 | Canola | nucleus | 19.48 | 9.98 |
| CDX90525 | Canola | nucleus | 16.85 | 9.87 |
| CDY03183 | Canola | nucleus | 18.73 | 9.82 |
| CDY59973 | Canola | nucleus | 18.73 | 9.82 |
| CDX78808 | Canola | nucleus | 20.97 | 9.67 |
| CDY44507 | Canola | nucleus | 20.6 | 9.39 |
| CDY58950 | Canola | nucleus | 19.85 | 9.19 |
| CDY09695 | Canola | nucleus | 16.48 | 9.03 |
| CDY39747 | Canola | nucleus | 18.73 | 8.94 |
| CDY25513 | Canola | nucleus | 17.98 | 8.32 |
| CDY08314 | Canola | nucleus | 17.98 | 7.93 |
| CDY34367 | Canola | nucleus | 17.6 | 7.89 |
| CDY70506 | Canola | nucleus | 14.98 | 7.49 |
| CDY51155 | Canola | mitochondrion, nucleus | 14.98 | 7.38 |
| CDY07214 | Canola | mitochondrion, nucleus | 14.61 | 7.2 |
| CDX91907 | Canola | nucleus | 14.61 | 7.17 |
| CDY70012 | Canola | nucleus | 3.37 | 3.37 |
| CDX77694 | Canola | nucleus | 2.62 | 2.77 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 1.12 | 1.58 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | GO:A0A078DL76 | EnsemblPlants:CDX89627 | ProteinID:CDX89627 |
| ProteinID:CDX89627.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00149992001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF100 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDE7A0 | InterPro:bHLH_dom |
Description
BnaC03g45410D
Coordinates
chrLK031860:+:256375..258317
Molecular Weight (calculated)
29778.1 Da
IEP (calculated)
9.629
GRAVY (calculated)
-0.251
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTNFPTPEE LNDILSLPSL QTMEPQLYSH QSPVVTTLNA EAAKQLKHRS YMNTTTNQCS SGFGEYGAMG NLQPKKEHTV LAQRNVSRGV SQARDHIMAE
101: RRRREKLSQR FIALSTIVPG LKKTDKASVL GGTIKYLKHL QDRVRFLEEQ ASQRTIESVV YLNKSRLSVA DTELECIALP EIEARSSGIN VLIRVHCERR
201: KGVVEITMAE IEKLKLTVIN SSVITFGSSS LHLTIISQMG EGFNITTKDV VTSIKSSLEA FMNANLV
101: RRRREKLSQR FIALSTIVPG LKKTDKASVL GGTIKYLKHL QDRVRFLEEQ ASQRTIESVV YLNKSRLSVA DTELECIALP EIEARSSGIN VLIRVHCERR
201: KGVVEITMAE IEKLKLTVIN SSVITFGSSS LHLTIISQMG EGFNITTKDV VTSIKSSLEA FMNANLV
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.