Factsheet for VIT_03s0088g01240.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g106460.2.1	Tomato	nucleus	46.8	66.26
VIT_00s0824g00020.t01	Wine grape	nucleus	32.85	66.08
VIT_07s0205g00160.t01	Wine grape	nucleus	33.43	61.83
KRH49880	Soybean	nucleus	53.78	56.23
GSMUA_Achr8P05170_001	Banana	nucleus	32.27	55.22
GSMUA_Achr7P00800_001	Banana	cytosol	36.05	52.99
KRH21680	Soybean	nucleus, vacuole	56.98	52.13
KRH10664	Soybean	nucleus	55.52	51.76
PGSC0003DMT400013074	Potato	nucleus	52.91	51.56
VIT_07s0205g00170.t01	Wine grape	cytosol	17.73	48.41
GSMUA_Achr7P27600_001	Banana	nucleus	45.06	46.41
GSMUA_Achr3P30620_001	Banana	nucleus	43.6	46.3
CDX89627	Canola	nucleus	35.17	45.32
GSMUA_Achr2P08590_001	Banana	nucleus	34.88	45.11
VIT_07s0205g00190.t01	Wine grape	nucleus	44.19	44.97
VIT_07s0205g00180.t01	Wine grape	nucleus	45.64	44.86
Bra013128.1-P	Field mustard	nucleus	34.59	44.57
CDX93135	Canola	nucleus	34.59	44.57
GSMUA_AchrUn_...	Banana	nucleus	41.57	44.41
VIT_00s1314g00010.t01	Wine grape	nucleus	43.02	44.31
GSMUA_Achr8P26460_001	Banana	nucleus	41.57	43.07
GSMUA_Achr3P26180_001	Banana	nucleus	36.63	42.71
GSMUA_Achr4P03160_001	Banana	nucleus	40.12	42.2
GSMUA_Achr4P23070_001	Banana	nucleus	37.79	41.53
KXG37671	Sorghum	nucleus	42.44	41.01
Os03t0725800-01	Rice	nucleus	42.44	40.67
Zm00001d033848_P004	Maize	nucleus	42.44	40.11
HORVU4Hr1G009440.2	Barley	nucleus	39.24	39.59
VIT_00s0927g00010.t01	Wine grape	nucleus	26.16	39.47
TraesCS4B01G056600.2	Wheat	nucleus	41.28	37.97
TraesCS4D01G056900.2	Wheat	nucleus	41.28	37.87
TraesCS4A01G257900.2	Wheat	nucleus	40.7	37.14
Zm00001d013370_P001	Maize	plastid	39.83	36.73
VIT_00s0384g00020.t01	Wine grape	nucleus	17.44	30.46
GSMUA_Achr4P14580_001	Banana	nucleus	24.71	25.6
GSMUA_Achr4P03170_001	Banana	nucleus	22.67	22.87
VIT_02s0025g02610.t01	Wine grape	nucleus	16.86	16.07
VIT_15s0048g02820.t01	Wine grape	nucleus	22.38	15.49
VIT_02s0012g01320.t01	Wine grape	nucleus	24.13	12.52
VIT_07s0141g01060.t01	Wine grape	nucleus	17.73	12.42
VIT_02s0025g03450.t01	Wine grape	nucleus	19.48	10.67
VIT_15s0046g00320.t01	Wine grape	nucleus	18.6	10.6
VIT_07s0104g00090.t01	Wine grape	nucleus	19.77	9.77
VIT_15s0046g02560.t01	Wine grape	nucleus	18.02	9.41

Protein Annotations

EntrezGene:100248064	wikigene:100248064	MapMan:15.5.32	MapMan:25.4.1.7	Gene3D:4.10.280.10	EMBL:AM471624
ProteinID:CAN75020	ProteinID:CAN75020.1	ProteinID:CBI25069	ProteinID:CBI25069.3	ncoils:Coil	UniProt:D7T3I8
EMBL:FN595512	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100248064	wikigene:LOC100248064	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF48	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001BE2505	ArrayExpress:VIT_03s0088g01240
EnsemblPlantsGene:VIT_03s0088g01240	EnsemblPlants:VIT_03s0088g01240.t01	unigene:Vvi.17825	RefSeq:XP_002268443	RefSeq:XP_002268443.2	RefSeq:XP_002268443.3
RefSeq:XP_010647980.1	RefSeq:XP_019074348.1	InterPro:bHLH_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:+:9525109..9527109

Molecular Weight (calculated)

38481.0 Da

IEP (calculated)

6.927

GRAVY (calculated)

-0.381

Length

344 amino acids

Sequence
(BLAST)

001: MEISPLRGLS EVGMEDPTFI HPWQTNFLEE LTVLPMEAAF GEHLYQAFSH HQSFNLKPSM EINSHVGLDR PLKLLKPNSW NPSNTNDMDM PHPLVPSSPN
101: VFSFVNSNYT NQVPVVKPKE EAVSSKSSAT FPSDGLVSQG LFENQNYVFK ASQGAKRIST TTARHSQTQD HIIAERKRRE KLSQRFIALS AIVPGLKKMD
201: KASVLGDAIK YLKQLQERVK TLEEQTRKKT TESVVFVKKS QVFLDGDNSS SDEDFSGSPL DEPLPEIEAR FSDKSVLIRI HCEKRKGVVE KLVAEVEGLH
301: LTVINSSVMT FGNSALDVTI IAEMEVEFSM TVKDLVKKLH AGLK

Best Arabidopsis Sequence Match ( AT4G37850.2 )
(BLAST)

001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI

Arabidopsis Description

BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.