Factsheet for VIT_00s1314g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0205g00180.t01	Wine grape	nucleus	83.83	80.0
VIT_00s0824g00020.t01	Wine grape	nucleus	40.42	78.95
VIT_07s0205g00170.t01	Wine grape	cytosol	26.05	69.05
VIT_07s0205g00160.t01	Wine grape	nucleus	35.33	63.44
VIT_07s0205g00190.t01	Wine grape	nucleus	60.48	59.76
GSMUA_Achr8P05170_001	Banana	nucleus	30.54	50.75
GSMUA_Achr7P00800_001	Banana	cytosol	31.74	45.3
VIT_00s0927g00010.t01	Wine grape	nucleus	30.54	44.74
GSMUA_Achr2P08590_001	Banana	nucleus	35.03	43.98
GSMUA_Achr7P27600_001	Banana	nucleus	43.71	43.71
GSMUA_AchrUn_...	Banana	nucleus	41.62	43.17
VIT_03s0088g01240.t01	Wine grape	nucleus	44.31	43.02
GSMUA_Achr3P30620_001	Banana	nucleus	41.62	42.9
GSMUA_Achr8P26460_001	Banana	nucleus	41.62	41.87
GSMUA_Achr3P26180_001	Banana	nucleus	36.23	41.02
GSMUA_Achr4P03160_001	Banana	nucleus	40.12	40.98
GSMUA_Achr4P23070_001	Banana	nucleus	36.83	39.3
VIT_00s0384g00020.t01	Wine grape	nucleus	21.86	37.06
KXG37671	Sorghum	nucleus	36.53	34.27
Zm00001d033848_P004	Maize	nucleus	36.53	33.52
Os03t0725800-01	Rice	nucleus	35.03	32.59
HORVU4Hr1G009440.2	Barley	nucleus	31.14	30.5
Zm00001d013370_P001	Maize	plastid	33.83	30.29
TraesCS4B01G056600.2	Wheat	nucleus	33.83	30.21
TraesCS4D01G056900.2	Wheat	nucleus	33.23	29.6
TraesCS4A01G257900.2	Wheat	nucleus	33.23	29.44
GSMUA_Achr4P14580_001	Banana	nucleus	23.65	23.8
GSMUA_Achr4P03170_001	Banana	nucleus	23.65	23.17
VIT_02s0025g02610.t01	Wine grape	nucleus	17.37	16.07
VIT_15s0048g02820.t01	Wine grape	nucleus	20.36	13.68
VIT_07s0141g01060.t01	Wine grape	nucleus	16.77	11.41
VIT_02s0012g01320.t01	Wine grape	nucleus	21.86	11.01
VIT_02s0025g03450.t01	Wine grape	nucleus	18.86	10.03
VIT_15s0046g00320.t01	Wine grape	nucleus	17.66	9.77
VIT_15s0046g02560.t01	Wine grape	nucleus	16.47	8.35
VIT_07s0104g00090.t01	Wine grape	nucleus	16.77	8.05

Protein Annotations

EntrezGene:100242433	wikigene:100242433	MapMan:15.5.32	MapMan:25.4.1.7	Gene3D:4.10.280.10	EMBL:AM478204
ProteinID:CAN75180	ProteinID:CAN75180.1	ProteinID:CBI38512	ProteinID:CBI38512.3	ncoils:Coil	UniProt:D7U6Z4
EMBL:FN596594	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100242433	wikigene:LOC100242433	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR23042	PANTHER:PTHR23042:SF100	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001BE4C5D	ArrayExpress:VIT_00s1314g00010
EnsemblPlantsGene:VIT_00s1314g00010	EnsemblPlants:VIT_00s1314g00010.t01	unigene:Vvi.15412	RefSeq:XP_002262764	RefSeq:XP_002262764.1	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:38490496..38492516

Molecular Weight (calculated)

37423.1 Da

IEP (calculated)

8.366

GRAVY (calculated)

-0.566

Length

334 amino acids

Sequence
(BLAST)

001: MPPFDNSLDG FNFDSFSSES NSSYPSFSPE TTPNFCGSTI EYFQAAGVVG RPSKQLKTNS WDSCTAEPIT SRKSSSSSVQ LISFGNSNLP PPTDTLKFHG
101: HQDKKAKPKN EASSDRNMKF ASLISEGSYE NQNYSPKSGD RTKRVSSTTR NPLNNHDHVV AERKRREKLT QRFIALSALV PGLRKTDKVS VLGEAVKYLK
201: QLQERVKMLE VQTATKTMES VVSVKKSQLC DNDHSSSDQN SDSCSNQTLL EIEARVFNKD VLIRIHCERQ KGFTVKILDE IEKLHLTVVN SSSLPFGNYI
301: MVITVVAQME DEFCMTVEDL VRNLRLAFST LHMN

Best Arabidopsis Sequence Match ( AT4G37850.2 )
(BLAST)

001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI

Arabidopsis Description

BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.