Factsheet for GSMUA_Achr4P03160_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P27600_001	Banana	nucleus	75.54	73.95
GSMUA_Achr3P30620_001	Banana	nucleus	66.97	67.59
GSMUA_Achr8P05170_001	Banana	nucleus	37.92	61.69
GSMUA_Achr3P26180_001	Banana	nucleus	51.68	57.29
VIT_00s0824g00020.t01	Wine grape	nucleus	29.66	56.73
GSMUA_AchrUn_...	Banana	nucleus	53.82	54.66
GSMUA_Achr8P26460_001	Banana	nucleus	55.35	54.52
GSMUA_Achr2P08590_001	Banana	nucleus	43.43	53.38
VIT_07s0205g00160.t01	Wine grape	nucleus	30.28	53.23
GSMUA_Achr7P00800_001	Banana	cytosol	35.17	49.15
Solyc01g106460.2.1	Tomato	nucleus	34.25	46.09
HORVU4Hr1G009440.2	Barley	nucleus	46.48	44.57
Os03t0725800-01	Rice	nucleus	48.93	44.57
KXG37671	Sorghum	nucleus	48.32	44.38
Zm00001d033848_P004	Maize	nucleus	48.32	43.41
TraesCS4B01G056600.2	Wheat	nucleus	48.62	42.51
TraesCS4A01G257900.2	Wheat	nucleus	48.93	42.44
TraesCS4D01G056900.2	Wheat	nucleus	48.32	42.13
GSMUA_Achr4P23070_001	Banana	nucleus	39.45	41.21
CDX89627	Canola	nucleus	33.64	41.2
CDX93135	Canola	nucleus	33.33	40.82
Bra013128.1-P	Field mustard	nucleus	33.33	40.82
Zm00001d013370_P001	Maize	plastid	45.87	40.21
VIT_00s1314g00010.t01	Wine grape	nucleus	40.98	40.12
VIT_03s0088g01240.t01	Wine grape	nucleus	42.2	40.12
VIT_07s0205g00180.t01	Wine grape	nucleus	41.28	38.57
VIT_07s0205g00190.t01	Wine grape	nucleus	39.45	38.17
PGSC0003DMT400013074	Potato	nucleus	39.45	36.54
CDY13737	Canola	nucleus	32.72	36.27
KRH42021	Soybean	nucleus	21.41	35.9
KRH10664	Soybean	nucleus	40.37	35.77
KRH21680	Soybean	nucleus, vacuole	40.67	35.37
KRH49880	Soybean	nucleus	35.47	35.26
CDX89511	Canola	nucleus	34.25	34.89
Bra039924.1-P	Field mustard	nucleus	33.33	34.82
AT4G37850.1	Thale cress	nucleus	34.86	34.76
CDX76899	Canola	nucleus	34.25	34.67
Bra010617.1-P	Field mustard	nucleus	35.17	34.43
CDY49678	Canola	nucleus	35.17	34.43
CDY72199	Canola	nucleus	35.17	34.43
AT2G22750.3	Thale cress	nucleus	34.86	34.23
Bra011790.1-P	Field mustard	nucleus	34.86	33.93
CDX75679	Canola	nucleus	34.86	33.93
Bra030210.1-P	Field mustard	nucleus	33.33	33.85
VIT_00s0927g00010.t01	Wine grape	nucleus	23.55	33.77
CDY25628	Canola	nucleus	33.03	33.54
PGSC0003DMT400033757	Potato	nucleus	21.41	33.33
CDX69336	Canola	nucleus	33.33	32.25
PGSC0003DMT400078698	Potato	nucleus	19.88	31.1
Solyc02g091810.1.1	Tomato	nucleus	28.44	29.25
GSMUA_Achr4P14580_001	Banana	nucleus	29.66	29.22
GSMUA_Achr4P03170_001	Banana	nucleus	29.66	28.45
Solyc05g009640.2.1	Tomato	cytosol, nucleus, peroxisome	20.18	28.21
Solyc06g064590.1.1	Tomato	nucleus	24.16	28.11
VIT_00s0384g00020.t01	Wine grape	nucleus	16.51	27.41
Solyc06g064580.1.1	Tomato	nucleus	25.08	26.97
Solyc02g091820.1.1	Tomato	nucleus	26.3	26.38
PGSC0003DMT400078699	Potato	nucleus	25.99	26.32
GSMUA_Achr8P05350_001	Banana	nucleus	20.8	15.08
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	21.41	14.74
GSMUA_Achr1P18910_001	Banana	nucleus	17.43	14.47
GSMUA_Achr10P...	Banana	nucleus	17.43	14.29
GSMUA_Achr10P...	Banana	nucleus	19.88	14.16
GSMUA_Achr11P...	Banana	nucleus	18.96	13.84
GSMUA_Achr8P26280_001	Banana	cytosol	19.57	13.82
GSMUA_Achr1P28110_001	Banana	nucleus	20.49	13.48
GSMUA_Achr7P14640_001	Banana	nucleus	19.88	13.43
GSMUA_Achr3P00370_001	Banana	plastid	17.43	12.95
GSMUA_Achr2P18140_001	Banana	nucleus	18.35	12.93
GSMUA_Achr7P04720_001	Banana	nucleus	18.35	12.79
GSMUA_Achr11P...	Banana	nucleus	18.35	12.74
GSMUA_Achr4P16980_001	Banana	nucleus	19.27	12.43
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	21.71	12.35
GSMUA_Achr6P35730_001	Banana	nucleus	18.04	12.02
GSMUA_Achr9P20820_001	Banana	nucleus	13.46	11.96
GSMUA_Achr8P11430_001	Banana	nucleus	19.88	11.9
GSMUA_Achr11P...	Banana	nucleus	19.88	11.78
GSMUA_Achr3P17620_001	Banana	nucleus	19.88	11.52
GSMUA_Achr5P20600_001	Banana	nucleus	20.18	11.22
GSMUA_Achr11P...	Banana	nucleus	19.88	10.96
GSMUA_Achr8P14720_001	Banana	nucleus	19.57	10.94
GSMUA_AchrUn_...	Banana	cytosol	17.13	10.83
GSMUA_Achr11P...	Banana	nucleus	15.9	10.81
GSMUA_Achr5P18100_001	Banana	nucleus	14.37	9.61
GSMUA_Achr6P21490_001	Banana	nucleus	18.96	9.52
GSMUA_Achr1P08130_001	Banana	mitochondrion	15.29	8.96

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.7	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr4G03160_001	EnsemblPlants:GSMUA_Achr4P03160_001	EnsemblPlants:GSMUA_Achr4T03160_001	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M0SKN3	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR23042
PANTHER:PTHR23042:SF100	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000295D75B	InterPro:bHLH_dom	SEG:seg

Description

Putative Transcription factor bHLH25 [Source:GMGC_GENE;Acc:GSMUA_Achr4G03160_001]

Coordinates

chr4:-:2550420..2551899

Molecular Weight (calculated)

35891.6 Da

IEP (calculated)

9.345

GRAVY (calculated)

-0.395

Length

327 amino acids

Sequence
(BLAST)

001: MEAEAPAAAG GWYSDVGMNG GFFHQWGFTE QFTAAQFAAA LGQDFQRSLS SASHNSFPRD QRPKRPLEAS SWSSCTTEQN SCLVPNASSP TILSFGNPDS
101: SIDQNDVYGG LVGVVKPKRE MDALHHHGSK RSYGAMAEQR SKAVSNGTRS TYHNKEHIIA ERKRREKLTQ RFIALSAVVP GLKKMDKASV LGDAINYLKR
201: LEEKVKMLED QAAKRTVESA VLVKRSRLRV DVDSSSRDES LDGLPQIEAK MSGKTVLVKI HCDNRKGLLV KVLSEIEKLH LSVANTSAIS FVGSSLDITV
301: MAQVEEGFDM TVKDVVTQLS SAFRQLT

Best Arabidopsis Sequence Match ( AT4G37850.2 )
(BLAST)

001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI

Arabidopsis Description

BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.