Factsheet for GSMUA_Achr8P05350_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P21870_001
GSMUA_Achr2P21770_001
GSMUA_Achr3P02140_001
GSMUA_Achr3P05920_001
GSMUA_Achr3P10270_001
GSMUA_Achr5P05170_001
GSMUA_Achr5P22110_001
GSMUA_Achr6P31050_001
GSMUA_Achr7P19850_001
GSMUA_Achr8P16780_001
GSMUA_Achr9P14370_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01260.1	GSMUA_Achr10P...	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr11P...	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr1P21870_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr2P21770_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr3P02140_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr3P05920_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr3P10270_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr5P05170_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr5P22110_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr6P31050_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr7P19850_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr8P16780_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_Achr9P14370_001	AT1G19180.1	21798944
AT1G01260.1	GSMUA_AchrUn_...	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P26280_001	Banana	cytosol	66.3	64.58
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	65.63	62.32
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	73.61	57.74
GSMUA_Achr1P28110_001	Banana	nucleus	58.09	52.72
GSMUA_Achr10P...	Banana	nucleus	51.44	50.54
GSMUA_Achr6P35730_001	Banana	nucleus	51.88	47.66
GSMUA_Achr7P14640_001	Banana	nucleus	47.89	44.63
CDY27319	Canola	nucleus	41.02	41.76
VIT_15s0046g00320.t01	Wine grape	nucleus	55.88	41.72
KRH68922	Soybean	nucleus	50.11	41.09
CDY66312	Canola	nucleus	41.46	40.83
Bra039279.1-P	Field mustard	nucleus	41.46	40.74
PGSC0003DMT400000652	Potato	nucleus	53.88	40.64
Solyc01g096050.2.1	Tomato	nucleus	54.1	40.33
Solyc05g050560.1.1	Tomato	nucleus	50.78	39.55
Bra004532.1-P	Field mustard	nucleus	42.57	39.51
PGSC0003DMT400018046	Potato	extracellular, nucleus	50.55	39.45
CDX80023	Canola	nucleus	42.35	39.22
CDY56874	Canola	nucleus	42.57	39.1
KRH47899	Soybean	nucleus	52.33	37.7
TraesCS4D01G275500.1	Wheat	nucleus	49.89	37.63
TraesCS4B01G276900.1	Wheat	nucleus	49.89	37.63
TraesCS4A01G028900.1	Wheat	nucleus	49.45	37.35
EER99993	Sorghum	nucleus	51.22	37.14
KRG97199	Soybean	nucleus	50.78	37.0
Zm00001d009013_P001	Maize	nucleus	50.11	36.99
KRH06456	Soybean	nucleus	50.33	36.73
AT2G46510.1	Thale cress	nucleus	45.9	36.57
Zm00001d039271_P001	Maize	nucleus	49.89	36.53
CDX90021	Canola	nucleus	43.68	36.48
TraesCS3A01G158600.1	Wheat	nucleus	49.45	36.2
AT1G01260.1	Thale cress	nucleus	47.01	35.93
TraesCS3B01G185400.1	Wheat	nucleus	49.67	35.84
TraesCS3D01G166300.2	Wheat	nucleus	49.67	35.84
Os01t0235700-01	Rice	nucleus	49.0	35.82
Bra033273.1-P	Field mustard	nucleus	45.23	34.93
EES19274	Sorghum	nucleus	45.23	34.75
GSMUA_Achr11P...	Banana	nucleus	30.82	31.03
GSMUA_Achr7P04720_001	Banana	nucleus	32.15	30.92
GSMUA_Achr3P00370_001	Banana	plastid	29.93	30.68
GSMUA_Achr1P18910_001	Banana	nucleus	26.61	30.46
GSMUA_Achr10P...	Banana	nucleus	26.83	30.33
HORVU3Hr1G057280.2	Barley	nucleus	49.67	29.2
GSMUA_Achr2P18140_001	Banana	nucleus	29.71	28.88
GSMUA_Achr4P16980_001	Banana	nucleus	31.71	28.21
GSMUA_Achr9P20820_001	Banana	nucleus	22.39	27.45
GSMUA_Achr5P18100_001	Banana	nucleus	29.27	26.99
GSMUA_Achr8P14720_001	Banana	nucleus	33.04	25.47
Zm00001d007536_P001	Maize	plastid	32.59	24.22
GSMUA_Achr11P...	Banana	nucleus	25.5	23.91
GSMUA_Achr8P05170_001	Banana	nucleus	10.64	23.88
GSMUA_Achr2P08590_001	Banana	nucleus	13.3	22.56
GSMUA_AchrUn_...	Banana	cytosol	25.72	22.44
GSMUA_Achr4P03160_001	Banana	nucleus	15.08	20.8
GSMUA_Achr1P08130_001	Banana	mitochondrion	25.72	20.79
GSMUA_Achr7P00800_001	Banana	cytosol	10.64	20.51
GSMUA_Achr3P26180_001	Banana	nucleus	13.3	20.34
GSMUA_AchrUn_...	Banana	nucleus	13.75	19.25
GSMUA_Achr7P27600_001	Banana	nucleus	14.19	19.16
GSMUA_Achr8P26460_001	Banana	nucleus	13.75	18.67
GSMUA_Achr8P11430_001	Banana	nucleus	22.17	18.32
GSMUA_Achr11P...	Banana	nucleus	19.07	18.26
GSMUA_Achr4P23070_001	Banana	nucleus	12.42	17.89
GSMUA_Achr11P...	Banana	nucleus	21.29	17.39
GSMUA_Achr3P30620_001	Banana	nucleus	12.42	17.28
GSMUA_Achr3P17620_001	Banana	nucleus	20.62	16.49
GSMUA_Achr11P...	Banana	nucleus	21.29	16.19
GSMUA_Achr5P20600_001	Banana	nucleus	19.51	14.97
GSMUA_Achr4P14580_001	Banana	nucleus	10.64	14.46
GSMUA_Achr6P21490_001	Banana	nucleus	20.62	14.29
GSMUA_Achr4P03170_001	Banana	nucleus	9.09	12.02

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr8G05350_001	EnsemblPlants:GSMUA_Achr8P05350_001	EnsemblPlants:GSMUA_Achr8T05350_001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M0TMT8	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF47	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002952440	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

Putative Transcription factor ABA-INDUCIBLE bHLH-TYPE [Source:GMGC_GENE;Acc:GSMUA_Achr8G05350_001]

Coordinates

chr8:+:3496245..3498142

Molecular Weight (calculated)

49303.2 Da

IEP (calculated)

5.766

GRAVY (calculated)

-0.442

Length

451 amino acids

Sequence
(BLAST)

001: MALAVLGHQA FDYLNARHAA SSDGHLTAVG GGDADLQTKL QDLVEGPGSV AWAYAIFWQI SRSDSDELVL GWGDGHCIET GDEEEEEEGC GSRRNPLDGA
101: HQKMRKRMYF LASMYFSFPK GEDAPGRALE SGKYIWISEA VLASPACSNH YVRAFLARTA GFRTIIFIPF ESGVLELGSV DPVPESFEAL YMIRSLFGHG
201: LSKGEAAPGE KTDENNGPQA LPRPLPPSGQ IDFSSAAAAA ANPAPAGVLI GRAGAVDSEL SDVEAPCKEH KPGGTEERRP RKRGRKPANG REEPLNHVEA
301: ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAISYITE LQKKLKEMEA EREMWGDPSR VDHKRPPPHC PEIDIQTAQD EVIVRVNCPL DRHPVSQVIQ
401: ALKDSQIDVV DSKVAATNDS VLHTFVVKSP AAEQLTKEKL IAALAHEFRA T

Best Arabidopsis Sequence Match ( AT2G46510.1 )
(BLAST)

001: MNMSDLGWDD EDKSVVSAVL GHLASDFLRA NSNSNQNLFL VMGTDDTLNK KLSSLVDWPN SENFSWNYAI FWQQTMSRSG QQVLGWGDGC CREPNEEEES
101: KVVRSYNFNN MGAEEETWQD MRKRVLQKLH RLFGGSDEDN YALSLEKVTA TEIFFLASMY FFFNHGEGGP GRCYSSGKHV WLSDAVNSES DYCFRSFMAK
201: SAGIRTIVMV PTDAGVLELG SVWSLPENIG LVKSVQALFM RRVTQPVMVT SNTNMTGGIH KLFGQDLSGA HAYPKKLEVR RNLDERFTPQ SWEGYNNNKG
301: PTFGYTPQRD DVKVLENVNM VVDNNNYKTQ IEFAGSSVAA SSNPSTNTQQ EKSESCTEKR PVSLLAGAGI VSVVDEKRPR KRGRKPANGR EEPLNHVEAE
401: RQRREKLNQR FYALRSVVPN ISKMDKASLL GDAISYIKEL QEKVKIMEDE RVGTDKSLSE SNTITVEESP EVDIQAMNEE VVVRVISPLD SHPASRIIQA
501: MRNSNVSLME AKLSLAEDTM FHTFVIKSNN GSDPLTKEKL IAAFYPETSS TQPPLPSSSS QVSGDI

Arabidopsis Description

AIBTranscription factor ABA-INDUCIBLE bHLH-TYPE [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPY8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.