Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P05350_001 | Banana | nucleus | 62.32 | 65.63 |
| GSMUA_Achr8P26280_001 | Banana | cytosol | 63.58 | 65.23 |
| GSMUA_Achr1P14370_001 | Banana | cytosol, nucleus, plastid | 62.32 | 51.48 |
| GSMUA_Achr1P28110_001 | Banana | nucleus | 52.0 | 49.7 |
| GSMUA_Achr6P35730_001 | Banana | nucleus | 50.53 | 48.88 |
| GSMUA_Achr10P... | Banana | nucleus | 47.16 | 48.8 |
| GSMUA_Achr7P14640_001 | Banana | nucleus | 44.0 | 43.18 |
| CDY27319 | Canola | nucleus | 39.16 | 41.99 |
| Bra004532.1-P | Field mustard | nucleus | 42.32 | 41.36 |
| CDY56874 | Canola | nucleus | 42.53 | 41.14 |
| CDX80023 | Canola | nucleus | 42.11 | 41.07 |
| CDY66312 | Canola | nucleus | 39.16 | 40.61 |
| Bra039279.1-P | Field mustard | nucleus | 39.16 | 40.52 |
| KRH68922 | Soybean | nucleus | 46.53 | 40.18 |
| VIT_15s0046g00320.t01 | Wine grape | nucleus | 50.95 | 40.07 |
| PGSC0003DMT400000652 | Potato | nucleus | 49.26 | 39.13 |
| Solyc01g096050.2.1 | Tomato | nucleus | 49.68 | 39.01 |
| Zm00001d009013_P001 | Maize | nucleus | 49.26 | 38.3 |
| TraesCS4A01G028900.1 | Wheat | nucleus | 47.79 | 38.02 |
| TraesCS4B01G276900.1 | Wheat | nucleus | 47.79 | 37.96 |
| TraesCS4D01G275500.1 | Wheat | nucleus | 47.79 | 37.96 |
| PGSC0003DMT400018046 | Potato | extracellular, nucleus | 46.11 | 37.89 |
| Zm00001d039271_P001 | Maize | nucleus | 48.84 | 37.66 |
| Solyc05g050560.1.1 | Tomato | nucleus | 45.89 | 37.65 |
| EER99993 | Sorghum | nucleus | 48.84 | 37.3 |
| Os01t0235700-01 | Rice | nucleus | 47.79 | 36.79 |
| KRH06456 | Soybean | nucleus | 47.58 | 36.57 |
| KRH47899 | Soybean | nucleus | 48.0 | 36.42 |
| TraesCS3A01G158600.1 | Wheat | nucleus | 46.95 | 36.2 |
| KRG97199 | Soybean | nucleus | 46.95 | 36.03 |
| CDX90021 | Canola | nucleus | 40.84 | 35.93 |
| AT2G46510.1 | Thale cress | nucleus | 42.74 | 35.87 |
| TraesCS3D01G166300.2 | Wheat | nucleus | 47.16 | 35.84 |
| TraesCS3B01G185400.1 | Wheat | nucleus | 47.16 | 35.84 |
| AT1G01260.1 | Thale cress | nucleus | 44.42 | 35.76 |
| Bra033273.1-P | Field mustard | nucleus | 42.11 | 34.25 |
| EES19274 | Sorghum | nucleus | 42.32 | 34.24 |
| GSMUA_Achr3P00370_001 | Banana | plastid | 28.42 | 30.68 |
| GSMUA_Achr7P04720_001 | Banana | nucleus | 29.68 | 30.06 |
| HORVU3Hr1G057280.2 | Barley | nucleus | 47.58 | 29.47 |
| GSMUA_Achr11P... | Banana | nucleus | 27.79 | 29.46 |
| GSMUA_Achr1P18910_001 | Banana | nucleus | 24.42 | 29.44 |
| GSMUA_Achr10P... | Banana | nucleus | 24.0 | 28.57 |
| GSMUA_Achr2P18140_001 | Banana | nucleus | 27.58 | 28.23 |
| GSMUA_Achr4P16980_001 | Banana | nucleus | 28.63 | 26.82 |
| GSMUA_Achr9P20820_001 | Banana | nucleus | 20.42 | 26.36 |
| GSMUA_Achr8P14720_001 | Banana | nucleus | 30.74 | 24.96 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 10.53 | 24.88 |
| GSMUA_Achr5P18100_001 | Banana | nucleus | 25.47 | 24.74 |
| Zm00001d007536_P001 | Maize | plastid | 30.32 | 23.72 |
| GSMUA_Achr11P... | Banana | nucleus | 24.0 | 23.7 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 13.26 | 23.68 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 13.47 | 21.69 |
| GSMUA_AchrUn_... | Banana | cytosol | 23.58 | 21.66 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 14.74 | 21.41 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 10.11 | 20.51 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 13.68 | 19.46 |
| GSMUA_Achr1P08130_001 | Banana | mitochondrion | 22.74 | 19.35 |
| GSMUA_Achr11P... | Banana | nucleus | 19.16 | 19.32 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 13.47 | 19.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 13.05 | 19.25 |
| GSMUA_Achr8P11430_001 | Banana | nucleus | 21.89 | 19.05 |
| GSMUA_Achr11P... | Banana | nucleus | 20.84 | 17.93 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 12.21 | 17.9 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 11.79 | 17.89 |
| GSMUA_Achr3P17620_001 | Banana | nucleus | 20.0 | 16.84 |
| GSMUA_Achr11P... | Banana | nucleus | 20.63 | 16.53 |
| GSMUA_Achr5P20600_001 | Banana | nucleus | 19.37 | 15.65 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 10.53 | 15.06 |
| GSMUA_Achr6P21490_001 | Banana | nucleus | 20.42 | 14.9 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 8.84 | 12.32 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSMUA_AchrUn_randomG01830_001 | EnsemblPlants:GSMUA_AchrUn_randomP01830_001 | EnsemblPlants:GSMUA_AchrUn_randomT01830_001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | UniProt:M0U5J5 | InterPro:MYC/MYB_N | PFAM:PF00010 | PFAM:PF14215 | PFscan:PS50888 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF47 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000296E576 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
Putative Transcription factor bHLH3 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG01830_001]
Coordinates
chrchrUn_random:+:8464173..8467897
Molecular Weight (calculated)
53223.4 Da
IEP (calculated)
8.683
GRAVY (calculated)
-0.340
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVAVLGHQA FHFLSSRHET SSDSQLTAVG CGDAGLQNKL QDLVEGRRSA ASSSWAYAIF WQISRSESGD LVLSWGDGHC RELEDAEEVD GGSRSHPLEA
101: TRQEMRKRMY FLASMYFSFP KGEDAPGRAL ASGKHIWISE AALASPACAN YCVRAFLARS AGFRTIVFVP FDAGVLELGS VDPVLESFET LHKIRSIFGN
201: DLNLGRAQLD GRATSAKFGN SVAYVRHVNG FVRDDRPRTN PFQPQKLQPQ QQQRQQPLSQ PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV
301: PNISKMDKAS LLGDAISYIT ELQKKLKEME AEREMWGDPC LMDYKRRSQC PDIDVQVAQG EVIVRVTCPL ESHPVSEVIQ AFKNSQINVA DSCVTSNNDS
401: VLHTFVVKSP VAEQLTKEKL IAAFNSILIS CILILFPKIR YWLRFLICSS LLFFSRIATD VGGSSVHGEH KWRSH
101: TRQEMRKRMY FLASMYFSFP KGEDAPGRAL ASGKHIWISE AALASPACAN YCVRAFLARS AGFRTIVFVP FDAGVLELGS VDPVLESFET LHKIRSIFGN
201: DLNLGRAQLD GRATSAKFGN SVAYVRHVNG FVRDDRPRTN PFQPQKLQPQ QQQRQQPLSQ PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV
301: PNISKMDKAS LLGDAISYIT ELQKKLKEME AEREMWGDPC LMDYKRRSQC PDIDVQVAQG EVIVRVTCPL ESHPVSEVIQ AFKNSQINVA DSCVTSNNDS
401: VLHTFVVKSP VAEQLTKEKL IAAFNSILIS CILILFPKIR YWLRFLICSS LLFFSRIATD VGGSSVHGEH KWRSH
001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR
Arabidopsis Description
BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.