Factsheet for AT1G01260.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90021	Canola	nucleus	71.69	78.33
Bra033273.1-P	Field mustard	nucleus	77.46	78.25
VIT_15s0046g00320.t01	Wine grape	nucleus	56.44	55.13
PGSC0003DMT400018046	Potato	extracellular, nucleus	53.22	54.33
Solyc01g096050.2.1	Tomato	nucleus	55.08	53.72
Solyc05g050560.1.1	Tomato	nucleus	52.03	53.02
PGSC0003DMT400000652	Potato	nucleus	53.56	52.84
KRH68922	Soybean	nucleus	48.64	52.18
KRH06456	Soybean	nucleus	54.41	51.94
KRH47899	Soybean	nucleus	52.88	49.84
GSMUA_Achr10P...	Banana	nucleus	37.63	48.37
AT2G46510.1	Thale cress	nucleus	46.1	48.06
KRG97199	Soybean	nucleus	50.0	47.66
GSMUA_Achr1P28110_001	Banana	nucleus	39.66	47.08
GSMUA_Achr8P05350_001	Banana	nucleus	35.93	47.01
GSMUA_Achr8P26280_001	Banana	cytosol	35.59	45.36
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	35.76	44.42
GSMUA_Achr6P35730_001	Banana	nucleus	35.59	42.77
GSMUA_Achr1P14370_001	Banana	cytosol, nucleus, plastid	39.32	40.35
GSMUA_Achr7P14640_001	Banana	nucleus	32.71	39.88
AT4G16430.1	Thale cress	nucleus	31.53	39.83
TraesCS4A01G028900.1	Wheat	nucleus	40.17	39.7
TraesCS4B01G276900.1	Wheat	nucleus	40.17	39.63
TraesCS4D01G275500.1	Wheat	nucleus	40.0	39.46
Os01t0235700-01	Rice	nucleus	40.85	39.06
Zm00001d039271_P001	Maize	nucleus	40.51	38.8
TraesCS3A01G158600.1	Wheat	nucleus	40.34	38.64
EER99993	Sorghum	nucleus	40.68	38.59
Zm00001d009013_P001	Maize	nucleus	39.83	38.46
TraesCS3B01G185400.1	Wheat	nucleus	40.51	38.24
TraesCS3D01G166300.2	Wheat	nucleus	40.34	38.08
EES19274	Sorghum	nucleus	37.46	37.65
HORVU3Hr1G057280.2	Barley	nucleus	40.85	31.42
AT5G46760.1	Thale cress	nucleus	27.97	27.87
AT4G17880.1	Thale cress	nucleus	27.46	27.5
Zm00001d007536_P001	Maize	plastid	27.97	27.18
AT5G46830.1	Thale cress	nucleus	23.39	27.01
AT1G32640.1	Thale cress	nucleus	28.47	26.97
AT4G00870.1	Thale cress	nucleus, plastid	19.32	26.95
AT4G09820.1	Thale cress	nucleus	18.98	21.62
AT4G37850.1	Thale cress	nucleus	11.53	20.73
AT2G22750.3	Thale cress	nucleus	11.19	19.82
AT1G63650.1	Thale cress	nucleus	20.0	19.8
AT5G41315.2	Thale cress	nucleus	20.0	18.29
AT2G22760.1	Thale cress	nucleus	8.31	16.61
AT2G22770.1	Thale cress	nucleus	8.81	16.25
AT4G00480.2	Thale cress	nucleus	15.42	15.69

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:839545	UniProt:A0A178WJW5	ProteinID:AAF97322.1	ProteinID:AEE27262.1
ProteinID:AEE27263.1	ProteinID:AEE27264.1	EMBL:AF251698	EMBL:AF488559	ArrayExpress:AT1G01260	EnsemblPlantsGene:AT1G01260
RefSeq:AT1G01260	TAIR:AT1G01260	RefSeq:AT1G01260-TAIR-G	EnsemblPlants:AT1G01260.1	TAIR:AT1G01260.1	EMBL:AY079012
EMBL:AY120752	EMBL:BT004517	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010629	GO:GO:0044212	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:MYC/MYB_N	RefSeq:NP_001077440.1	RefSeq:NP_001184883.1
RefSeq:NP_171634.1	ProteinID:OAP18650.1	PFAM:PF00010	PFAM:PF14215	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PFscan:PS50888	PANTHER:PTHR11514	PANTHER:PTHR11514:SF47	UniProt:Q9LNJ5
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000000C386	InterPro:bHLH_dom	SEG:seg	:

Description

BHLH13Transcription factor bHLH13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ5]

Coordinates

chr1:+:108991..111699

Molecular Weight (calculated)

66005.6 Da

IEP (calculated)

6.708

GRAVY (calculated)

-0.592

Length

590 amino acids

Sequence
(BLAST)

001: MNIGRLVWNE DDKAIVASLL GKRALDYLLS NSVSNANLLM TLGSDENLQN KLSDLVERPN ASNFSWNYAI FWQISRSKAG DLVLCWGDGY CREPKEGEKS
101: EIVRILSMGR EEETHQTMRK RVLQKLHDLF GGSEEENCAL GLDRVTDTEM FLLSSMYFSF PRGEGGPGKC FASAKPVWLS DVVNSGSDYC VRSFLAKSAG
201: IQTVVLVPTD LGVVELGSTS CLPESEDSIL SIRSLFTSSL PPVRAVALPV TVAEKIDDNR TKIFGKDLHN SGFLQHHQHH QQQQQQPPQQ QQHRQFREKL
301: TVRKMDDRAP KRLDAYPNNG NRFMFSNPGT NNNTLLSPTW VQPENYTRPI NVKEVPSTDE FKFLPLQQSS QRLLPPAQMQ IDFSAASSRA SENNSDGEGG
401: GEWADAVGAD ESGNNRPRKR GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA KLKVMEAERE RLGYSSNPPI
501: SLDSDINVQT SGEDVTVRIN CPLESHPASR IFHAFEESKV EVINSNLEVS QDTVLHTFVV KSEELTKEKL ISALSREQTN SVQSRTSSGR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.