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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra010617.1-P Field mustard nucleus 78.66 77.25
CDX75679 Canola nucleus 78.96 77.08
Bra011790.1-P Field mustard nucleus 78.96 77.08
CDY72199 Canola nucleus 78.35 76.95
CDY49678 Canola nucleus 76.83 75.45
CDX69336 Canola nucleus 77.74 75.44
AT2G22750.3 Thale cress nucleus 61.28 60.36
GSMUA_Achr8P05170_001 Banana nucleus 28.96 47.26
GSMUA_Achr7P00800_001 Banana cytosol 28.66 40.17
GSMUA_Achr3P26180_001 Banana nucleus 35.37 39.32
GSMUA_Achr2P08590_001 Banana nucleus 31.71 39.1
GSMUA_Achr8P26460_001 Banana nucleus 38.41 37.95
VIT_00s0927g00010.t01 Wine grape nucleus 25.91 37.28
GSMUA_Achr7P27600_001 Banana nucleus 37.2 36.53
GSMUA_Achr3P30620_001 Banana nucleus 35.98 36.42
GSMUA_AchrUn_... Banana nucleus 35.67 36.34
GSMUA_Achr4P03160_001 Banana nucleus 34.76 34.86
PGSC0003DMT400033757 Potato nucleus 21.95 34.29
GSMUA_Achr4P23070_001 Banana nucleus 32.62 34.19
KRH42021 Soybean nucleus 19.82 33.33
KXG37671 Sorghum nucleus 35.98 33.15
AT2G22760.1 Thale cress nucleus 29.27 32.54
Solyc05g009640.2.1 Tomato cytosol, nucleus, peroxisome 23.17 32.48
Os03t0725800-01 Rice nucleus 35.37 32.31
Solyc02g091820.1.1 Tomato nucleus 31.71 31.9
Zm00001d033848_P004 Maize nucleus 35.37 31.87
HORVU4Hr1G009440.2 Barley nucleus 32.93 31.67
PGSC0003DMT400078699 Potato nucleus 30.79 31.27
Solyc02g091810.1.1 Tomato nucleus 30.18 31.13
PGSC0003DMT400078698 Potato nucleus 19.82 31.1
VIT_00s0384g00020.t01 Wine grape nucleus 18.6 30.96
TraesCS4D01G056900.2 Wheat nucleus 35.06 30.67
TraesCS4B01G056600.2 Wheat nucleus 34.76 30.48
AT2G22770.1 Thale cress nucleus 29.57 30.31
TraesCS4A01G257900.2 Wheat nucleus 34.45 29.97
Zm00001d013370_P001 Maize plastid 33.54 29.49
Solyc06g064580.1.1 Tomato nucleus 26.83 28.95
Solyc06g064590.1.1 Tomato nucleus 24.39 28.47
GSMUA_Achr4P14580_001 Banana nucleus 24.7 24.4
GSMUA_Achr4P03170_001 Banana nucleus 24.39 23.46
AT4G00870.1 Thale cress nucleus, plastid 17.07 13.24
AT4G17880.1 Thale cress nucleus 21.34 11.88
AT5G46760.1 Thale cress nucleus 21.04 11.66
AT1G32640.1 Thale cress nucleus 21.95 11.56
AT1G01260.1 Thale cress nucleus 20.73 11.53
AT5G46830.1 Thale cress nucleus 16.77 10.76
AT4G16430.1 Thale cress nucleus 15.24 10.71
AT4G09820.1 Thale cress nucleus 16.16 10.23
AT1G63650.1 Thale cress nucleus 17.99 9.9
AT2G46510.1 Thale cress nucleus 16.77 9.72
AT5G41315.2 Thale cress nucleus 17.99 9.15
AT4G00480.2 Thale cress nucleus 14.33 8.1
Protein Annotations
MapMan:15.5.32MapMan:25.4.1.7Gene3D:4.10.280.10EntrezGene:829941UniProt:A0A178UTY6ProteinID:AEE86845.1
EMBL:AF488567ProteinID:ANM67978.1ArrayExpress:AT4G37850EnsemblPlantsGene:AT4G37850RefSeq:AT4G37850TAIR:AT4G37850
RefSeq:AT4G37850-TAIR-GEnsemblPlants:AT4G37850.1TAIR:AT4G37850.1Unigene:At.31223ProteinID:CAB38933.1ProteinID:CAB80450.1
ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638RefSeq:NP_001329767.1RefSeq:NP_195498.3
ProteinID:OAO97073.1PFAM:PF00010PFscan:PS50888PANTHER:PTHR23042PANTHER:PTHR23042:SF100UniProt:Q9T072
SMART:SM00353SUPFAM:SSF47459UniParc:UPI0000196F36InterPro:bHLH_domSEG:seg:
Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
Coordinates
chr4:-:17796072..17797901
Molecular Weight (calculated)
37704.9 Da
IEP (calculated)
6.454
GRAVY (calculated)
-0.565
Length
328 amino acids
Sequence
(BLAST)
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.