Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra010617.1-P | Field mustard | nucleus | 78.66 | 77.25 |
CDX75679 | Canola | nucleus | 78.96 | 77.08 |
Bra011790.1-P | Field mustard | nucleus | 78.96 | 77.08 |
CDY72199 | Canola | nucleus | 78.35 | 76.95 |
CDY49678 | Canola | nucleus | 76.83 | 75.45 |
CDX69336 | Canola | nucleus | 77.74 | 75.44 |
AT2G22750.3 | Thale cress | nucleus | 61.28 | 60.36 |
GSMUA_Achr8P05170_001 | Banana | nucleus | 28.96 | 47.26 |
GSMUA_Achr7P00800_001 | Banana | cytosol | 28.66 | 40.17 |
GSMUA_Achr3P26180_001 | Banana | nucleus | 35.37 | 39.32 |
GSMUA_Achr2P08590_001 | Banana | nucleus | 31.71 | 39.1 |
GSMUA_Achr8P26460_001 | Banana | nucleus | 38.41 | 37.95 |
VIT_00s0927g00010.t01 | Wine grape | nucleus | 25.91 | 37.28 |
GSMUA_Achr7P27600_001 | Banana | nucleus | 37.2 | 36.53 |
GSMUA_Achr3P30620_001 | Banana | nucleus | 35.98 | 36.42 |
GSMUA_AchrUn_... | Banana | nucleus | 35.67 | 36.34 |
GSMUA_Achr4P03160_001 | Banana | nucleus | 34.76 | 34.86 |
PGSC0003DMT400033757 | Potato | nucleus | 21.95 | 34.29 |
GSMUA_Achr4P23070_001 | Banana | nucleus | 32.62 | 34.19 |
KRH42021 | Soybean | nucleus | 19.82 | 33.33 |
KXG37671 | Sorghum | nucleus | 35.98 | 33.15 |
AT2G22760.1 | Thale cress | nucleus | 29.27 | 32.54 |
Solyc05g009640.2.1 | Tomato | cytosol, nucleus, peroxisome | 23.17 | 32.48 |
Os03t0725800-01 | Rice | nucleus | 35.37 | 32.31 |
Solyc02g091820.1.1 | Tomato | nucleus | 31.71 | 31.9 |
Zm00001d033848_P004 | Maize | nucleus | 35.37 | 31.87 |
HORVU4Hr1G009440.2 | Barley | nucleus | 32.93 | 31.67 |
PGSC0003DMT400078699 | Potato | nucleus | 30.79 | 31.27 |
Solyc02g091810.1.1 | Tomato | nucleus | 30.18 | 31.13 |
PGSC0003DMT400078698 | Potato | nucleus | 19.82 | 31.1 |
VIT_00s0384g00020.t01 | Wine grape | nucleus | 18.6 | 30.96 |
TraesCS4D01G056900.2 | Wheat | nucleus | 35.06 | 30.67 |
TraesCS4B01G056600.2 | Wheat | nucleus | 34.76 | 30.48 |
AT2G22770.1 | Thale cress | nucleus | 29.57 | 30.31 |
TraesCS4A01G257900.2 | Wheat | nucleus | 34.45 | 29.97 |
Zm00001d013370_P001 | Maize | plastid | 33.54 | 29.49 |
Solyc06g064580.1.1 | Tomato | nucleus | 26.83 | 28.95 |
Solyc06g064590.1.1 | Tomato | nucleus | 24.39 | 28.47 |
GSMUA_Achr4P14580_001 | Banana | nucleus | 24.7 | 24.4 |
GSMUA_Achr4P03170_001 | Banana | nucleus | 24.39 | 23.46 |
AT4G00870.1 | Thale cress | nucleus, plastid | 17.07 | 13.24 |
AT4G17880.1 | Thale cress | nucleus | 21.34 | 11.88 |
AT5G46760.1 | Thale cress | nucleus | 21.04 | 11.66 |
AT1G32640.1 | Thale cress | nucleus | 21.95 | 11.56 |
AT1G01260.1 | Thale cress | nucleus | 20.73 | 11.53 |
AT5G46830.1 | Thale cress | nucleus | 16.77 | 10.76 |
AT4G16430.1 | Thale cress | nucleus | 15.24 | 10.71 |
AT4G09820.1 | Thale cress | nucleus | 16.16 | 10.23 |
AT1G63650.1 | Thale cress | nucleus | 17.99 | 9.9 |
AT2G46510.1 | Thale cress | nucleus | 16.77 | 9.72 |
AT5G41315.2 | Thale cress | nucleus | 17.99 | 9.15 |
AT4G00480.2 | Thale cress | nucleus | 14.33 | 8.1 |
Protein Annotations
MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | EntrezGene:829941 | UniProt:A0A178UTY6 | ProteinID:AEE86845.1 |
EMBL:AF488567 | ProteinID:ANM67978.1 | ArrayExpress:AT4G37850 | EnsemblPlantsGene:AT4G37850 | RefSeq:AT4G37850 | TAIR:AT4G37850 |
RefSeq:AT4G37850-TAIR-G | EnsemblPlants:AT4G37850.1 | TAIR:AT4G37850.1 | Unigene:At.31223 | ProteinID:CAB38933.1 | ProteinID:CAB80450.1 |
ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_001329767.1 | RefSeq:NP_195498.3 |
ProteinID:OAO97073.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF100 | UniProt:Q9T072 |
SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0000196F36 | InterPro:bHLH_dom | SEG:seg | : |
Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
Coordinates
chr4:-:17796072..17797901
Molecular Weight (calculated)
37704.9 Da
IEP (calculated)
6.454
GRAVY (calculated)
-0.565
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.